miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5884 5' -60.5 NC_001806.1 + 66527 0.76 0.216857
Target:  5'- uUGGCggCCAGGCCCGCGAGGgGGAagucGGGg -3'
miRNA:   3'- cACCG--GGUCUGGGCGCUCCaUCU----CCU- -5'
5884 5' -60.5 NC_001806.1 + 54010 0.76 0.222093
Target:  5'- -aGuGCCCacgAGGCCCGCGAGGgcacGAGGAc -3'
miRNA:   3'- caC-CGGG---UCUGGGCGCUCCau--CUCCU- -5'
5884 5' -60.5 NC_001806.1 + 117373 0.75 0.255804
Target:  5'- -cGGCCUGGG-CCGCGAGGUAGAuGGc -3'
miRNA:   3'- caCCGGGUCUgGGCGCUCCAUCU-CCu -5'
5884 5' -60.5 NC_001806.1 + 2822 0.74 0.267939
Target:  5'- -gGGCUCGGGcCCCGgGGGcGUGGAGGGg -3'
miRNA:   3'- caCCGGGUCU-GGGCgCUC-CAUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 22277 0.72 0.365964
Target:  5'- gGUGGCuCCAGaACCCGCGcguGGUccccGGGGAc -3'
miRNA:   3'- -CACCG-GGUC-UGGGCGCu--CCAu---CUCCU- -5'
5884 5' -60.5 NC_001806.1 + 120179 0.72 0.381837
Target:  5'- uUGGCCCcGACCaacgCGCGuGGuUGGGGGAg -3'
miRNA:   3'- cACCGGGuCUGG----GCGCuCC-AUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 147371 0.72 0.389945
Target:  5'- uUGGCCCcuGCCggCGCGAGG-GGGGGAc -3'
miRNA:   3'- cACCGGGucUGG--GCGCUCCaUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 117050 0.72 0.389945
Target:  5'- -aGGCCCggcuAGACCCacgGgGGGGUGGGGGu -3'
miRNA:   3'- caCCGGG----UCUGGG---CgCUCCAUCUCCu -5'
5884 5' -60.5 NC_001806.1 + 130494 0.71 0.406493
Target:  5'- -cGGCCCAGGCCgC-CGAGacGGAGGAg -3'
miRNA:   3'- caCCGGGUCUGG-GcGCUCcaUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 147109 0.71 0.406493
Target:  5'- -cGGCCCAGAagcagCGCGGGGgccGAGGGa -3'
miRNA:   3'- caCCGGGUCUgg---GCGCUCCau-CUCCU- -5'
5884 5' -60.5 NC_001806.1 + 21516 0.71 0.414931
Target:  5'- -cGGCCCGGGgCCGCGAacgGGAGGc -3'
miRNA:   3'- caCCGGGUCUgGGCGCUccaUCUCCu -5'
5884 5' -60.5 NC_001806.1 + 70517 0.71 0.414931
Target:  5'- -gGGCCCuGGCCCccCGAGGccaUGGGGGAc -3'
miRNA:   3'- caCCGGGuCUGGGc-GCUCC---AUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 29431 0.71 0.432124
Target:  5'- ---cCCCAGACCCGCaugGAGGccGAGGAg -3'
miRNA:   3'- caccGGGUCUGGGCG---CUCCauCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 10377 0.7 0.449726
Target:  5'- -gGGCCaAGACCuCGgGGGGgcgGGGGGAg -3'
miRNA:   3'- caCCGGgUCUGG-GCgCUCCa--UCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 19119 0.7 0.467716
Target:  5'- -gGGCCCGGGgCUGCGuuucccGGGUAGAccGGAc -3'
miRNA:   3'- caCCGGGUCUgGGCGC------UCCAUCU--CCU- -5'
5884 5' -60.5 NC_001806.1 + 119626 0.7 0.476849
Target:  5'- uGUGGCCCcagcgccccacGGGCCCG-GGGGc-GAGGAc -3'
miRNA:   3'- -CACCGGG-----------UCUGGGCgCUCCauCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 28154 0.7 0.476849
Target:  5'- -cGGCCUgaGGGCCgcccccagCGCGAGGU-GAGGGg -3'
miRNA:   3'- caCCGGG--UCUGG--------GCGCUCCAuCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 33809 0.7 0.495374
Target:  5'- -cGGCCggcgggUGGACUCGCGGGGggccGGAGGGu -3'
miRNA:   3'- caCCGG------GUCUGGGCGCUCCa---UCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 2557 0.7 0.495374
Target:  5'- -aGGCCaGGGCCCGCG-GGUcaaacauGAGGGc -3'
miRNA:   3'- caCCGGgUCUGGGCGCuCCAu------CUCCU- -5'
5884 5' -60.5 NC_001806.1 + 2454 0.69 0.504758
Target:  5'- -cGGCCCccggcGGcCCCGUgGGGGUGGGGGu -3'
miRNA:   3'- caCCGGG-----UCuGGGCG-CUCCAUCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.