miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5884 5' -60.5 NC_001806.1 + 1416 0.66 0.724393
Target:  5'- cGUGGCCgAGGCCCaGCGAaucccgggcggcgccGGcGGcAGGGc -3'
miRNA:   3'- -CACCGGgUCUGGG-CGCU---------------CCaUC-UCCU- -5'
5884 5' -60.5 NC_001806.1 + 2454 0.69 0.504758
Target:  5'- -cGGCCCccggcGGcCCCGUgGGGGUGGGGGu -3'
miRNA:   3'- caCCGGG-----UCuGGGCG-CUCCAUCUCCu -5'
5884 5' -60.5 NC_001806.1 + 2557 0.7 0.495374
Target:  5'- -aGGCCaGGGCCCGCG-GGUcaaacauGAGGGc -3'
miRNA:   3'- caCCGGgUCUGGGCGCuCCAu------CUCCU- -5'
5884 5' -60.5 NC_001806.1 + 2791 0.69 0.52375
Target:  5'- -cGGCCCgGGGCgCCGCGGgcuGGgcGGGGGc -3'
miRNA:   3'- caCCGGG-UCUG-GGCGCU---CCauCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 2822 0.74 0.267939
Target:  5'- -gGGCUCGGGcCCCGgGGGcGUGGAGGGg -3'
miRNA:   3'- caCCGGGUCU-GGGCgCUC-CAUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 4343 0.67 0.638791
Target:  5'- -gGGCCCGGcggcgcucgaugcgGCCCGCGgAGGccgcGGGGGu -3'
miRNA:   3'- caCCGGGUC--------------UGGGCGC-UCCau--CUCCU- -5'
5884 5' -60.5 NC_001806.1 + 6072 0.67 0.660676
Target:  5'- -cGGCCCcgggggcGGGCCCGgGcGGcGGGGGGc -3'
miRNA:   3'- caCCGGG-------UCUGGGCgCuCCaUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 9789 0.66 0.681469
Target:  5'- -gGGCCCcGACgUGCG-GGUGGGuGGGc -3'
miRNA:   3'- caCCGGGuCUGgGCGCuCCAUCU-CCU- -5'
5884 5' -60.5 NC_001806.1 + 10377 0.7 0.449726
Target:  5'- -gGGCCaAGACCuCGgGGGGgcgGGGGGAg -3'
miRNA:   3'- caCCGGgUCUGG-GCgCUCCa--UCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 19119 0.7 0.467716
Target:  5'- -gGGCCCGGGgCUGCGuuucccGGGUAGAccGGAc -3'
miRNA:   3'- caCCGGGUCUgGGCGC------UCCAUCU--CCU- -5'
5884 5' -60.5 NC_001806.1 + 19211 0.68 0.562494
Target:  5'- -aGGuuuaCCCGGGCCCGCuuGGGUcguGGGGGAa -3'
miRNA:   3'- caCC----GGGUCUGGGCGc-UCCA---UCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 21177 0.66 0.73015
Target:  5'- -cGaGCCCAGACCgCGaCGAGc-GGGGGGc -3'
miRNA:   3'- caC-CGGGUCUGG-GC-GCUCcaUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 21516 0.71 0.414931
Target:  5'- -cGGCCCGGGgCCGCGAacgGGAGGc -3'
miRNA:   3'- caCCGGGUCUgGGCGCUccaUCUCCu -5'
5884 5' -60.5 NC_001806.1 + 22122 0.66 0.691315
Target:  5'- -gGGCCUcugggGGGCgCC-CGAGGcGGAGGAg -3'
miRNA:   3'- caCCGGG-----UCUG-GGcGCUCCaUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 22277 0.72 0.365964
Target:  5'- gGUGGCuCCAGaACCCGCGcguGGUccccGGGGAc -3'
miRNA:   3'- -CACCG-GGUC-UGGGCGCu--CCAu---CUCCU- -5'
5884 5' -60.5 NC_001806.1 + 24577 0.66 0.681469
Target:  5'- -cGGCgcgCCGGACuuCUGCGAGGaGGAGGc -3'
miRNA:   3'- caCCG---GGUCUG--GGCGCUCCaUCUCCu -5'
5884 5' -60.5 NC_001806.1 + 26687 0.66 0.678507
Target:  5'- -cGGCCCccaccgcccggcguGGGCCCG-GGGGgcGGGGc -3'
miRNA:   3'- caCCGGG--------------UCUGGGCgCUCCauCUCCu -5'
5884 5' -60.5 NC_001806.1 + 28154 0.7 0.476849
Target:  5'- -cGGCCUgaGGGCCgcccccagCGCGAGGU-GAGGGg -3'
miRNA:   3'- caCCGGG--UCUGG--------GCGCUCCAuCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 29431 0.71 0.432124
Target:  5'- ---cCCCAGACCCGCaugGAGGccGAGGAg -3'
miRNA:   3'- caccGGGUCUGGGCG---CUCCauCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 29625 0.67 0.641779
Target:  5'- -cGGCaaGGACCCuggGgGAGGaGGAGGAg -3'
miRNA:   3'- caCCGggUCUGGG---CgCUCCaUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.