miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5885 5' -62.4 NC_001806.1 + 78379 0.75 0.206128
Target:  5'- gCCCaGGCGCuggcgGCGGUGAGCGUCCucGGg -3'
miRNA:   3'- gGGGcCCGUG-----CGCCACUCGUAGG--CCa -5'
5885 5' -62.4 NC_001806.1 + 98600 0.74 0.239203
Target:  5'- aCCUgGGGCGCGCGGUcggcaagguggugauGGGCAUCgUGGg -3'
miRNA:   3'- -GGGgCCCGUGCGCCA---------------CUCGUAG-GCCa -5'
5885 5' -62.4 NC_001806.1 + 151259 0.74 0.241965
Target:  5'- cCCCCGGGCccacgccGgGCGGUGGGgG-CCGGg -3'
miRNA:   3'- -GGGGCCCG-------UgCGCCACUCgUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 83030 0.73 0.271679
Target:  5'- cCCCCGGGguCcUGGcGAGCGUCgCGGUg -3'
miRNA:   3'- -GGGGCCCguGcGCCaCUCGUAG-GCCA- -5'
5885 5' -62.4 NC_001806.1 + 103929 0.72 0.303589
Target:  5'- -gCCGGGuCACGCGGcugacgcgGAGCGUCCGu- -3'
miRNA:   3'- ggGGCCC-GUGCGCCa-------CUCGUAGGCca -5'
5885 5' -62.4 NC_001806.1 + 77312 0.72 0.303589
Target:  5'- uUCCgGGGCGCGCGG-GAGCucAUCCa-- -3'
miRNA:   3'- -GGGgCCCGUGCGCCaCUCG--UAGGcca -5'
5885 5' -62.4 NC_001806.1 + 6087 0.72 0.32408
Target:  5'- gCCCGGGCG-GCGGgGGGCGggucucUCCGGc -3'
miRNA:   3'- gGGGCCCGUgCGCCaCUCGU------AGGCCa -5'
5885 5' -62.4 NC_001806.1 + 66861 0.72 0.338303
Target:  5'- gCCCGGGCACacgGCGGUGAcGCucgcuagcucGUCCuGGg -3'
miRNA:   3'- gGGGCCCGUG---CGCCACU-CG----------UAGG-CCa -5'
5885 5' -62.4 NC_001806.1 + 81267 0.71 0.352975
Target:  5'- uCCCCGGGCcucACGgGGUcccGGGCGUCgaaGGUu -3'
miRNA:   3'- -GGGGCCCG---UGCgCCA---CUCGUAGg--CCA- -5'
5885 5' -62.4 NC_001806.1 + 4178 0.71 0.368091
Target:  5'- gCCCCGGGgGCGgGGgcccGGCG-CCGGg -3'
miRNA:   3'- -GGGGCCCgUGCgCCac--UCGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 147680 0.71 0.375814
Target:  5'- gCCCCGGGggccgggGCGCGG-GGGCGggccCCGGa -3'
miRNA:   3'- -GGGGCCCg------UGCGCCaCUCGUa---GGCCa -5'
5885 5' -62.4 NC_001806.1 + 29962 0.71 0.375814
Target:  5'- -gCCGcGGCGcCGCGGgGGGCGUCUGGc -3'
miRNA:   3'- ggGGC-CCGU-GCGCCaCUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 116529 0.71 0.382858
Target:  5'- gCCCCuGGCgcgcgaaaucgugGCGCGGcucguggccagGGGCAUCCGGg -3'
miRNA:   3'- -GGGGcCCG-------------UGCGCCa----------CUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 144572 0.71 0.383646
Target:  5'- uUCCGGGCGCGUccgGGUGccgcGGCucUCCGGg -3'
miRNA:   3'- gGGGCCCGUGCG---CCAC----UCGu-AGGCCa -5'
5885 5' -62.4 NC_001806.1 + 58475 0.7 0.398821
Target:  5'- aCCCCGaGCucgaACGUGGUGGGCGUggcacuaucggccCCGGUc -3'
miRNA:   3'- -GGGGCcCG----UGCGCCACUCGUA-------------GGCCA- -5'
5885 5' -62.4 NC_001806.1 + 25877 0.7 0.405325
Target:  5'- cCCCgCGGGCGCGCgcgcgcgcaaaaaaGGcGGGCggcgGUCCGGg -3'
miRNA:   3'- -GGG-GCCCGUGCG--------------CCaCUCG----UAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 20595 0.7 0.407781
Target:  5'- gCCCCGcccauGGCagaugGCGCGGaUGGGCGgggCCGGg -3'
miRNA:   3'- -GGGGC-----CCG-----UGCGCC-ACUCGUa--GGCCa -5'
5885 5' -62.4 NC_001806.1 + 117062 0.7 0.407781
Target:  5'- aCCCaCGGGgGgGUgggGGUGGGCAUCCaGGg -3'
miRNA:   3'- -GGG-GCCCgUgCG---CCACUCGUAGG-CCa -5'
5885 5' -62.4 NC_001806.1 + 106485 0.7 0.416035
Target:  5'- uCCCCGucGGCcucgACGUGGcccgUGGGCAUCUGGa -3'
miRNA:   3'- -GGGGC--CCG----UGCGCC----ACUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 50644 0.7 0.441396
Target:  5'- gCCCGGGCGUGCGGgGAcgcGCA-CCGGc -3'
miRNA:   3'- gGGGCCCGUGCGCCaCU---CGUaGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.