miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5885 5' -62.4 NC_001806.1 + 1435 0.67 0.598577
Target:  5'- aUCCCGGGCgGCGcCGGcggcaGGGCccCCGGg -3'
miRNA:   3'- -GGGGCCCG-UGC-GCCa----CUCGuaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 2514 0.68 0.50376
Target:  5'- gCCUGGGCG-GCGG-GGGCGggcCCGGc -3'
miRNA:   3'- gGGGCCCGUgCGCCaCUCGUa--GGCCa -5'
5885 5' -62.4 NC_001806.1 + 2793 0.69 0.494605
Target:  5'- gCCCgGGGCGcCGCGGgcUGGGCGggggCGGg -3'
miRNA:   3'- -GGGgCCCGU-GCGCC--ACUCGUag--GCCa -5'
5885 5' -62.4 NC_001806.1 + 2830 0.7 0.441396
Target:  5'- gCCCCGGGgGCGUGGagggGGGCGcgggCgCGGg -3'
miRNA:   3'- -GGGGCCCgUGCGCCa---CUCGUa---G-GCCa -5'
5885 5' -62.4 NC_001806.1 + 3956 0.68 0.507443
Target:  5'- uCCCCGGGgaccaCGCGCGGguucugGAGcCAccccaggccuccgcgUCCGGg -3'
miRNA:   3'- -GGGGCCC-----GUGCGCCa-----CUC-GU---------------AGGCCa -5'
5885 5' -62.4 NC_001806.1 + 4178 0.71 0.368091
Target:  5'- gCCCCGGGgGCGgGGgcccGGCG-CCGGg -3'
miRNA:   3'- -GGGGCCCgUGCgCCac--UCGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 4740 0.68 0.541069
Target:  5'- gCCCCGGGC-CGgGGcccGGUcgCCGGc -3'
miRNA:   3'- -GGGGCCCGuGCgCCac-UCGuaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 4825 0.67 0.578294
Target:  5'- gUCCgGGGCGgcgaggcCGCGGggucGGGCGUCgGGa -3'
miRNA:   3'- -GGGgCCCGU-------GCGCCa---CUCGUAGgCCa -5'
5885 5' -62.4 NC_001806.1 + 5078 0.68 0.550546
Target:  5'- gUCUGGGCuCGgGGUGGGCGgcggcccgUCGGUg -3'
miRNA:   3'- gGGGCCCGuGCgCCACUCGUa-------GGCCA- -5'
5885 5' -62.4 NC_001806.1 + 6087 0.72 0.32408
Target:  5'- gCCCGGGCG-GCGGgGGGCGggucucUCCGGc -3'
miRNA:   3'- gGGGCCCGUgCGCCaCUCGU------AGGCCa -5'
5885 5' -62.4 NC_001806.1 + 10385 0.68 0.550546
Target:  5'- aCCUCGGGgGgGCGGgggGAgGCGggagCCGGg -3'
miRNA:   3'- -GGGGCCCgUgCGCCa--CU-CGUa---GGCCa -5'
5885 5' -62.4 NC_001806.1 + 15083 0.69 0.493693
Target:  5'- uCUCgGGGCGCGCGGggGAGUuguugggAUCgGGg -3'
miRNA:   3'- -GGGgCCCGUGCGCCa-CUCG-------UAGgCCa -5'
5885 5' -62.4 NC_001806.1 + 15180 0.66 0.656868
Target:  5'- gCCCGGGgACuGgGGUaGGGUGUCaCGGg -3'
miRNA:   3'- gGGGCCCgUG-CgCCA-CUCGUAG-GCCa -5'
5885 5' -62.4 NC_001806.1 + 20595 0.7 0.407781
Target:  5'- gCCCCGcccauGGCagaugGCGCGGaUGGGCGgggCCGGg -3'
miRNA:   3'- -GGGGC-----CCG-----UGCGCC-ACUCGUa--GGCCa -5'
5885 5' -62.4 NC_001806.1 + 21882 0.68 0.522286
Target:  5'- cCCCCGcGGCcucCGCGGgccgcaucGAGCGccgCCGGg -3'
miRNA:   3'- -GGGGC-CCGu--GCGCCa-------CUCGUa--GGCCa -5'
5885 5' -62.4 NC_001806.1 + 22171 0.66 0.656868
Target:  5'- gCCUCGGGCGCcccgGCGGccgugUGGGCGcCCGa- -3'
miRNA:   3'- -GGGGCCCGUG----CGCC-----ACUCGUaGGCca -5'
5885 5' -62.4 NC_001806.1 + 22301 0.68 0.531647
Target:  5'- uCCCCGGGgACGUGGcgcugGAccaggccuGCuUCCGGa -3'
miRNA:   3'- -GGGGCCCgUGCGCCa----CU--------CGuAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 22442 0.69 0.453528
Target:  5'- gCCUGGcGCACGCGGcggccgccguggccaUGAGCcgCCGa- -3'
miRNA:   3'- gGGGCC-CGUGCGCC---------------ACUCGuaGGCca -5'
5885 5' -62.4 NC_001806.1 + 22635 0.68 0.541069
Target:  5'- -aCCGGGCgagcGCGCGGUGc-CcgCCGGg -3'
miRNA:   3'- ggGGCCCG----UGCGCCACucGuaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 24670 0.66 0.627709
Target:  5'- gCUgGGGCGCgagGCGGUGcGCG-CCGGc -3'
miRNA:   3'- gGGgCCCGUG---CGCCACuCGUaGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.