miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5885 5' -62.4 NC_001806.1 + 151259 0.74 0.241965
Target:  5'- cCCCCGGGCccacgccGgGCGGUGGGgG-CCGGg -3'
miRNA:   3'- -GGGGCCCG-------UgCGCCACUCgUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 148173 0.67 0.607303
Target:  5'- gCCUCugcguggGGGgGCGCGG--GGCGUCCGGc -3'
miRNA:   3'- -GGGG-------CCCgUGCGCCacUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 147996 0.66 0.621875
Target:  5'- cCCCCGcGGCGCcgcggcucgcgacugGCGG-GAGCcgCCGc- -3'
miRNA:   3'- -GGGGC-CCGUG---------------CGCCaCUCGuaGGCca -5'
5885 5' -62.4 NC_001806.1 + 147680 0.71 0.375814
Target:  5'- gCCCCGGGggccgggGCGCGG-GGGCGggccCCGGa -3'
miRNA:   3'- -GGGGCCCg------UGCGCCaCUCGUa---GGCCa -5'
5885 5' -62.4 NC_001806.1 + 144572 0.71 0.383646
Target:  5'- uUCCGGGCGCGUccgGGUGccgcGGCucUCCGGg -3'
miRNA:   3'- gGGGCCCGUGCG---CCAC----UCGu-AGGCCa -5'
5885 5' -62.4 NC_001806.1 + 133005 0.66 0.647157
Target:  5'- gCCCUGGGC-CGgGGccgucuugGAGCGcCUGGUc -3'
miRNA:   3'- -GGGGCCCGuGCgCCa-------CUCGUaGGCCA- -5'
5885 5' -62.4 NC_001806.1 + 132774 0.66 0.617015
Target:  5'- gCCCGcGGUgcgggaggcggugGCGCGGUG-GCAUCCc-- -3'
miRNA:   3'- gGGGC-CCG-------------UGCGCCACuCGUAGGcca -5'
5885 5' -62.4 NC_001806.1 + 129671 0.66 0.675264
Target:  5'- gCCCGGGC-CGCc--GAGCGgcccgucUCCGGa -3'
miRNA:   3'- gGGGCCCGuGCGccaCUCGU-------AGGCCa -5'
5885 5' -62.4 NC_001806.1 + 123513 0.66 0.647157
Target:  5'- aCCUCGauccGGCGCuuGGUGAGCGcCUGGa -3'
miRNA:   3'- -GGGGC----CCGUGcgCCACUCGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 123168 0.68 0.512989
Target:  5'- gCCuuGGGCACGCGaGacuaucaGAGCAccccCCGGg -3'
miRNA:   3'- -GGggCCCGUGCGC-Ca------CUCGUa---GGCCa -5'
5885 5' -62.4 NC_001806.1 + 117062 0.7 0.407781
Target:  5'- aCCCaCGGGgGgGUgggGGUGGGCAUCCaGGg -3'
miRNA:   3'- -GGG-GCCCgUgCG---CCACUCGUAGG-CCa -5'
5885 5' -62.4 NC_001806.1 + 116529 0.71 0.382858
Target:  5'- gCCCCuGGCgcgcgaaaucgugGCGCGGcucguggccagGGGCAUCCGGg -3'
miRNA:   3'- -GGGGcCCG-------------UGCGCCa----------CUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 115320 0.66 0.618959
Target:  5'- gUCCCGGGCcuuCGCGGccacggccaacccgUGGGCGUCgcagcgauuuucguaCGGg -3'
miRNA:   3'- -GGGGCCCGu--GCGCC--------------ACUCGUAG---------------GCCa -5'
5885 5' -62.4 NC_001806.1 + 115230 0.68 0.522286
Target:  5'- cCCCCGGGgACGCGccgccggGGGCGUUuacgCGGg -3'
miRNA:   3'- -GGGGCCCgUGCGCca-----CUCGUAG----GCCa -5'
5885 5' -62.4 NC_001806.1 + 109259 0.66 0.627709
Target:  5'- gCCCCGGGCACcagggaacucgaGuCGGUGuuguuuggcggaGGCG-CCGGc -3'
miRNA:   3'- -GGGGCCCGUG------------C-GCCAC------------UCGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 106485 0.7 0.416035
Target:  5'- uCCCCGucGGCcucgACGUGGcccgUGGGCAUCUGGa -3'
miRNA:   3'- -GGGGC--CCG----UGCGCC----ACUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 103929 0.72 0.303589
Target:  5'- -gCCGGGuCACGCGGcugacgcgGAGCGUCCGu- -3'
miRNA:   3'- ggGGCCC-GUGCGCCa-------CUCGUAGGCca -5'
5885 5' -62.4 NC_001806.1 + 103798 0.67 0.587937
Target:  5'- cCCCCGGGCGgcgccgcCGCGGcggcgacGGGCucgCUGGg -3'
miRNA:   3'- -GGGGCCCGU-------GCGCCa------CUCGua-GGCCa -5'
5885 5' -62.4 NC_001806.1 + 99993 0.68 0.541069
Target:  5'- uCCCCGGGguagUACG-GGUaGuccGCGUCCGGUu -3'
miRNA:   3'- -GGGGCCC----GUGCgCCA-Cu--CGUAGGCCA- -5'
5885 5' -62.4 NC_001806.1 + 98600 0.74 0.239203
Target:  5'- aCCUgGGGCGCGCGGUcggcaagguggugauGGGCAUCgUGGg -3'
miRNA:   3'- -GGGgCCCGUGCGCCA---------------CUCGUAG-GCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.