miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5885 5' -62.4 NC_001806.1 + 25506 0.67 0.569645
Target:  5'- cCCCCGaGGgaGCGCGG-GAcGCG-CCGGg -3'
miRNA:   3'- -GGGGC-CCg-UGCGCCaCU-CGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 25877 0.7 0.405325
Target:  5'- cCCCgCGGGCGCGCgcgcgcgcaaaaaaGGcGGGCggcgGUCCGGg -3'
miRNA:   3'- -GGG-GCCCGUGCG--------------CCaCUCG----UAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 27845 0.66 0.627709
Target:  5'- uCCCCGGGgAcggggccgcccCGCGGUGGGCcugccucccCUGGg -3'
miRNA:   3'- -GGGGCCCgU-----------GCGCCACUCGua-------GGCCa -5'
5885 5' -62.4 NC_001806.1 + 29962 0.71 0.375814
Target:  5'- -gCCGcGGCGcCGCGGgGGGCGUCUGGc -3'
miRNA:   3'- ggGGC-CCGU-GCGCCaCUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 30179 0.66 0.617987
Target:  5'- gCCCCGGGCcccccgcgucCGCGGcc-GCGUCgGGa -3'
miRNA:   3'- -GGGGCCCGu---------GCGCCacuCGUAGgCCa -5'
5885 5' -62.4 NC_001806.1 + 32958 0.69 0.467611
Target:  5'- gCCCCGGGC-CGgGGccccuUGGGuCcgCCGGg -3'
miRNA:   3'- -GGGGCCCGuGCgCC-----ACUC-GuaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 34351 0.66 0.617987
Target:  5'- cCCCCGGGgaACGgGGgaccggggcUGGGUAUCCcgaGGUg -3'
miRNA:   3'- -GGGGCCCg-UGCgCC---------ACUCGUAGG---CCA- -5'
5885 5' -62.4 NC_001806.1 + 38282 0.69 0.467611
Target:  5'- aCCgCCGGGCGaGCGGcgucGAGUAucggcUCCGGUc -3'
miRNA:   3'- -GG-GGCCCGUgCGCCa---CUCGU-----AGGCCA- -5'
5885 5' -62.4 NC_001806.1 + 41392 0.66 0.666561
Target:  5'- gCCCUGGGCGCggauGCGauccGUGAGCcgCCu-- -3'
miRNA:   3'- -GGGGCCCGUG----CGC----CACUCGuaGGcca -5'
5885 5' -62.4 NC_001806.1 + 41846 0.66 0.656868
Target:  5'- gCCCCGGGCGCGUacGUgcGAGCGcgCaGGUa -3'
miRNA:   3'- -GGGGCCCGUGCGc-CA--CUCGUa-GgCCA- -5'
5885 5' -62.4 NC_001806.1 + 44455 0.66 0.666561
Target:  5'- gCCCGGcGUcCGCGuG-GAGCAUgCGGa -3'
miRNA:   3'- gGGGCC-CGuGCGC-CaCUCGUAgGCCa -5'
5885 5' -62.4 NC_001806.1 + 45294 0.67 0.588903
Target:  5'- aCgCGGGCccGCGCGGgGAGCcgcCCGGc -3'
miRNA:   3'- gGgGCCCG--UGCGCCaCUCGua-GGCCa -5'
5885 5' -62.4 NC_001806.1 + 49368 0.66 0.656868
Target:  5'- gCCCCGGGCccgAUGCGGcccGuAGCcagUCGGUg -3'
miRNA:   3'- -GGGGCCCG---UGCGCCa--C-UCGua-GGCCA- -5'
5885 5' -62.4 NC_001806.1 + 50644 0.7 0.441396
Target:  5'- gCCCGGGCGUGCGGgGAcgcGCA-CCGGc -3'
miRNA:   3'- gGGGCCCGUGCGCCaCU---CGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 55719 0.69 0.467611
Target:  5'- cCUCCGGGCugGCGGcUGAc---CCGGg -3'
miRNA:   3'- -GGGGCCCGugCGCC-ACUcguaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 58475 0.7 0.398821
Target:  5'- aCCCCGaGCucgaACGUGGUGGGCGUggcacuaucggccCCGGUc -3'
miRNA:   3'- -GGGGCcCG----UGCGCCACUCGUA-------------GGCCA- -5'
5885 5' -62.4 NC_001806.1 + 62837 0.66 0.627709
Target:  5'- gCgCCGaGGCG-GCGGUGGGCAUCagcgcgacaaacUGGUg -3'
miRNA:   3'- -GgGGC-CCGUgCGCCACUCGUAG------------GCCA- -5'
5885 5' -62.4 NC_001806.1 + 62925 0.66 0.627709
Target:  5'- cCCUCGuaC-CGCGGccGGGCGUCCGGa -3'
miRNA:   3'- -GGGGCccGuGCGCCa-CUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 64965 0.66 0.676229
Target:  5'- gCCCGGGC-CGgGGgucccgGGGCAaacaUCCaGGg -3'
miRNA:   3'- gGGGCCCGuGCgCCa-----CUCGU----AGG-CCa -5'
5885 5' -62.4 NC_001806.1 + 65661 0.67 0.588903
Target:  5'- cCCCUGGGUggcuGCGCuG-GGGCcgCCGGc -3'
miRNA:   3'- -GGGGCCCG----UGCGcCaCUCGuaGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.