miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5885 5' -62.4 NC_001806.1 + 83243 0.66 0.656868
Target:  5'- cCCCCucaaGGGCcCGCGGggGGGCGggcgaCGGa -3'
miRNA:   3'- -GGGG----CCCGuGCGCCa-CUCGUag---GCCa -5'
5885 5' -62.4 NC_001806.1 + 77502 0.66 0.656868
Target:  5'- gCCgGGGCGaggcguaccUGCGaGUGAGCGgaggcCCGGg -3'
miRNA:   3'- gGGgCCCGU---------GCGC-CACUCGUa----GGCCa -5'
5885 5' -62.4 NC_001806.1 + 15180 0.66 0.656868
Target:  5'- gCCCGGGgACuGgGGUaGGGUGUCaCGGg -3'
miRNA:   3'- gGGGCCCgUG-CgCCA-CUCGUAG-GCCa -5'
5885 5' -62.4 NC_001806.1 + 22171 0.66 0.656868
Target:  5'- gCCUCGGGCGCcccgGCGGccgugUGGGCGcCCGa- -3'
miRNA:   3'- -GGGGCCCGUG----CGCC-----ACUCGUaGGCca -5'
5885 5' -62.4 NC_001806.1 + 86741 0.66 0.656868
Target:  5'- gCCCGGGgGCGCGcauGUcGGCcgccUCCGGg -3'
miRNA:   3'- gGGGCCCgUGCGC---CAcUCGu---AGGCCa -5'
5885 5' -62.4 NC_001806.1 + 41846 0.66 0.656868
Target:  5'- gCCCCGGGCGCGUacGUgcGAGCGcgCaGGUa -3'
miRNA:   3'- -GGGGCCCGUGCGc-CA--CUCGUa-GgCCA- -5'
5885 5' -62.4 NC_001806.1 + 49368 0.66 0.656868
Target:  5'- gCCCCGGGCccgAUGCGGcccGuAGCcagUCGGUg -3'
miRNA:   3'- -GGGGCCCG---UGCGCCa--C-UCGua-GGCCA- -5'
5885 5' -62.4 NC_001806.1 + 89086 0.67 0.560073
Target:  5'- aCCCCGGcGCGCuucucCGGggGGGCAUCCu-- -3'
miRNA:   3'- -GGGGCC-CGUGc----GCCa-CUCGUAGGcca -5'
5885 5' -62.4 NC_001806.1 + 25506 0.67 0.569645
Target:  5'- cCCCCGaGGgaGCGCGG-GAcGCG-CCGGg -3'
miRNA:   3'- -GGGGC-CCg-UGCGCCaCU-CGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 4825 0.67 0.578294
Target:  5'- gUCCgGGGCGgcgaggcCGCGGggucGGGCGUCgGGa -3'
miRNA:   3'- -GGGgCCCGU-------GCGCCa---CUCGUAGgCCa -5'
5885 5' -62.4 NC_001806.1 + 103798 0.67 0.587937
Target:  5'- cCCCCGGGCGgcgccgcCGCGGcggcgacGGGCucgCUGGg -3'
miRNA:   3'- -GGGGCCCGU-------GCGCCa------CUCGua-GGCCa -5'
5885 5' -62.4 NC_001806.1 + 77108 0.67 0.588903
Target:  5'- gUCCUGGGCGCcaagaGCGccGAGCGggCCGGg -3'
miRNA:   3'- -GGGGCCCGUG-----CGCcaCUCGUa-GGCCa -5'
5885 5' -62.4 NC_001806.1 + 65661 0.67 0.588903
Target:  5'- cCCCUGGGUggcuGCGCuG-GGGCcgCCGGc -3'
miRNA:   3'- -GGGGCCCG----UGCGcCaCUCGuaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 45294 0.67 0.588903
Target:  5'- aCgCGGGCccGCGCGGgGAGCcgcCCGGc -3'
miRNA:   3'- gGgGCCCG--UGCGCCaCUCGua-GGCCa -5'
5885 5' -62.4 NC_001806.1 + 1435 0.67 0.598577
Target:  5'- aUCCCGGGCgGCGcCGGcggcaGGGCccCCGGg -3'
miRNA:   3'- -GGGGCCCG-UGC-GCCa----CUCGuaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 148173 0.67 0.607303
Target:  5'- gCCUCugcguggGGGgGCGCGG--GGCGUCCGGc -3'
miRNA:   3'- -GGGG-------CCCgUGCGCCacUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 5078 0.68 0.550546
Target:  5'- gUCUGGGCuCGgGGUGGGCGgcggcccgUCGGUg -3'
miRNA:   3'- gGGGCCCGuGCgCCACUCGUa-------GGCCA- -5'
5885 5' -62.4 NC_001806.1 + 10385 0.68 0.550546
Target:  5'- aCCUCGGGgGgGCGGgggGAgGCGggagCCGGg -3'
miRNA:   3'- -GGGGCCCgUgCGCCa--CU-CGUa---GGCCa -5'
5885 5' -62.4 NC_001806.1 + 99993 0.68 0.541069
Target:  5'- uCCCCGGGguagUACG-GGUaGuccGCGUCCGGUu -3'
miRNA:   3'- -GGGGCCC----GUGCgCCA-Cu--CGUAGGCCA- -5'
5885 5' -62.4 NC_001806.1 + 22635 0.68 0.541069
Target:  5'- -aCCGGGCgagcGCGCGGUGc-CcgCCGGg -3'
miRNA:   3'- ggGGCCCG----UGCGCCACucGuaGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.