miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5885 5' -62.4 NC_001806.1 + 22635 0.68 0.541069
Target:  5'- -aCCGGGCgagcGCGCGGUGc-CcgCCGGg -3'
miRNA:   3'- ggGGCCCG----UGCGCCACucGuaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 4740 0.68 0.541069
Target:  5'- gCCCCGGGC-CGgGGcccGGUcgCCGGc -3'
miRNA:   3'- -GGGGCCCGuGCgCCac-UCGuaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 22301 0.68 0.531647
Target:  5'- uCCCCGGGgACGUGGcgcugGAccaggccuGCuUCCGGa -3'
miRNA:   3'- -GGGGCCCgUGCGCCa----CU--------CGuAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 21882 0.68 0.522286
Target:  5'- cCCCCGcGGCcucCGCGGgccgcaucGAGCGccgCCGGg -3'
miRNA:   3'- -GGGGC-CCGu--GCGCCa-------CUCGUa--GGCCa -5'
5885 5' -62.4 NC_001806.1 + 115230 0.68 0.522286
Target:  5'- cCCCCGGGgACGCGccgccggGGGCGUUuacgCGGg -3'
miRNA:   3'- -GGGGCCCgUGCGCca-----CUCGUAG----GCCa -5'
5885 5' -62.4 NC_001806.1 + 123168 0.68 0.512989
Target:  5'- gCCuuGGGCACGCGaGacuaucaGAGCAccccCCGGg -3'
miRNA:   3'- -GGggCCCGUGCGC-Ca------CUCGUa---GGCCa -5'
5885 5' -62.4 NC_001806.1 + 3956 0.68 0.507443
Target:  5'- uCCCCGGGgaccaCGCGCGGguucugGAGcCAccccaggccuccgcgUCCGGg -3'
miRNA:   3'- -GGGGCCC-----GUGCGCCa-----CUC-GU---------------AGGCCa -5'
5885 5' -62.4 NC_001806.1 + 67520 0.68 0.50376
Target:  5'- gCCCUGGGCcguCGCGGcGAGagAUCgGGg -3'
miRNA:   3'- -GGGGCCCGu--GCGCCaCUCg-UAGgCCa -5'
5885 5' -62.4 NC_001806.1 + 2514 0.68 0.50376
Target:  5'- gCCUGGGCG-GCGG-GGGCGggcCCGGc -3'
miRNA:   3'- gGGGCCCGUgCGCCaCUCGUa--GGCCa -5'
5885 5' -62.4 NC_001806.1 + 2793 0.69 0.494605
Target:  5'- gCCCgGGGCGcCGCGGgcUGGGCGggggCGGg -3'
miRNA:   3'- -GGGgCCCGU-GCGCC--ACUCGUag--GCCa -5'
5885 5' -62.4 NC_001806.1 + 15083 0.69 0.493693
Target:  5'- uCUCgGGGCGCGCGGggGAGUuguugggAUCgGGg -3'
miRNA:   3'- -GGGgCCCGUGCGCCa-CUCG-------UAGgCCa -5'
5885 5' -62.4 NC_001806.1 + 80572 0.69 0.484622
Target:  5'- gCCCCaaaacGGGCAUGUagcacccGGgGAGUAUCCGGc -3'
miRNA:   3'- -GGGG-----CCCGUGCG-------CCaCUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 32958 0.69 0.467611
Target:  5'- gCCCCGGGC-CGgGGccccuUGGGuCcgCCGGg -3'
miRNA:   3'- -GGGGCCCGuGCgCC-----ACUC-GuaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 55719 0.69 0.467611
Target:  5'- cCUCCGGGCugGCGGcUGAc---CCGGg -3'
miRNA:   3'- -GGGGCCCGugCGCC-ACUcguaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 38282 0.69 0.467611
Target:  5'- aCCgCCGGGCGaGCGGcgucGAGUAucggcUCCGGUc -3'
miRNA:   3'- -GG-GGCCCGUgCGCCa---CUCGU-----AGGCCA- -5'
5885 5' -62.4 NC_001806.1 + 22442 0.69 0.453528
Target:  5'- gCCUGGcGCACGCGGcggccgccguggccaUGAGCcgCCGa- -3'
miRNA:   3'- gGGGCC-CGUGCGCC---------------ACUCGuaGGCca -5'
5885 5' -62.4 NC_001806.1 + 50644 0.7 0.441396
Target:  5'- gCCCGGGCGUGCGGgGAcgcGCA-CCGGc -3'
miRNA:   3'- gGGGCCCGUGCGCCaCU---CGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 2830 0.7 0.441396
Target:  5'- gCCCCGGGgGCGUGGagggGGGCGcgggCgCGGg -3'
miRNA:   3'- -GGGGCCCgUGCGCCa---CUCGUa---G-GCCa -5'
5885 5' -62.4 NC_001806.1 + 106485 0.7 0.416035
Target:  5'- uCCCCGucGGCcucgACGUGGcccgUGGGCAUCUGGa -3'
miRNA:   3'- -GGGGC--CCG----UGCGCC----ACUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 117062 0.7 0.407781
Target:  5'- aCCCaCGGGgGgGUgggGGUGGGCAUCCaGGg -3'
miRNA:   3'- -GGG-GCCCgUgCG---CCACUCGUAGG-CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.