miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5885 5' -62.4 NC_001806.1 + 62837 0.66 0.627709
Target:  5'- gCgCCGaGGCG-GCGGUGGGCAUCagcgcgacaaacUGGUg -3'
miRNA:   3'- -GgGGC-CCGUgCGCCACUCGUAG------------GCCA- -5'
5885 5' -62.4 NC_001806.1 + 84253 0.66 0.627709
Target:  5'- -gCCGGGgGCGCGG-GcGCA-CCGGc -3'
miRNA:   3'- ggGGCCCgUGCGCCaCuCGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 147996 0.66 0.621875
Target:  5'- cCCCCGcGGCGCcgcggcucgcgacugGCGG-GAGCcgCCGc- -3'
miRNA:   3'- -GGGGC-CCGUG---------------CGCCaCUCGuaGGCca -5'
5885 5' -62.4 NC_001806.1 + 115320 0.66 0.618959
Target:  5'- gUCCCGGGCcuuCGCGGccacggccaacccgUGGGCGUCgcagcgauuuucguaCGGg -3'
miRNA:   3'- -GGGGCCCGu--GCGCC--------------ACUCGUAG---------------GCCa -5'
5885 5' -62.4 NC_001806.1 + 30179 0.66 0.617987
Target:  5'- gCCCCGGGCcccccgcgucCGCGGcc-GCGUCgGGa -3'
miRNA:   3'- -GGGGCCCGu---------GCGCCacuCGUAGgCCa -5'
5885 5' -62.4 NC_001806.1 + 34351 0.66 0.617987
Target:  5'- cCCCCGGGgaACGgGGgaccggggcUGGGUAUCCcgaGGUg -3'
miRNA:   3'- -GGGGCCCg-UGCgCC---------ACUCGUAGG---CCA- -5'
5885 5' -62.4 NC_001806.1 + 132774 0.66 0.617015
Target:  5'- gCCCGcGGUgcgggaggcggugGCGCGGUG-GCAUCCc-- -3'
miRNA:   3'- gGGGC-CCG-------------UGCGCCACuCGUAGGcca -5'
5885 5' -62.4 NC_001806.1 + 148173 0.67 0.607303
Target:  5'- gCCUCugcguggGGGgGCGCGG--GGCGUCCGGc -3'
miRNA:   3'- -GGGG-------CCCgUGCGCCacUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 1435 0.67 0.598577
Target:  5'- aUCCCGGGCgGCGcCGGcggcaGGGCccCCGGg -3'
miRNA:   3'- -GGGGCCCG-UGC-GCCa----CUCGuaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 77108 0.67 0.588903
Target:  5'- gUCCUGGGCGCcaagaGCGccGAGCGggCCGGg -3'
miRNA:   3'- -GGGGCCCGUG-----CGCcaCUCGUa-GGCCa -5'
5885 5' -62.4 NC_001806.1 + 65661 0.67 0.588903
Target:  5'- cCCCUGGGUggcuGCGCuG-GGGCcgCCGGc -3'
miRNA:   3'- -GGGGCCCG----UGCGcCaCUCGuaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 45294 0.67 0.588903
Target:  5'- aCgCGGGCccGCGCGGgGAGCcgcCCGGc -3'
miRNA:   3'- gGgGCCCG--UGCGCCaCUCGua-GGCCa -5'
5885 5' -62.4 NC_001806.1 + 103798 0.67 0.587937
Target:  5'- cCCCCGGGCGgcgccgcCGCGGcggcgacGGGCucgCUGGg -3'
miRNA:   3'- -GGGGCCCGU-------GCGCCa------CUCGua-GGCCa -5'
5885 5' -62.4 NC_001806.1 + 4825 0.67 0.578294
Target:  5'- gUCCgGGGCGgcgaggcCGCGGggucGGGCGUCgGGa -3'
miRNA:   3'- -GGGgCCCGU-------GCGCCa---CUCGUAGgCCa -5'
5885 5' -62.4 NC_001806.1 + 25506 0.67 0.569645
Target:  5'- cCCCCGaGGgaGCGCGG-GAcGCG-CCGGg -3'
miRNA:   3'- -GGGGC-CCg-UGCGCCaCU-CGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 89086 0.67 0.560073
Target:  5'- aCCCCGGcGCGCuucucCGGggGGGCAUCCu-- -3'
miRNA:   3'- -GGGGCC-CGUGc----GCCa-CUCGUAGGcca -5'
5885 5' -62.4 NC_001806.1 + 10385 0.68 0.550546
Target:  5'- aCCUCGGGgGgGCGGgggGAgGCGggagCCGGg -3'
miRNA:   3'- -GGGGCCCgUgCGCCa--CU-CGUa---GGCCa -5'
5885 5' -62.4 NC_001806.1 + 5078 0.68 0.550546
Target:  5'- gUCUGGGCuCGgGGUGGGCGgcggcccgUCGGUg -3'
miRNA:   3'- gGGGCCCGuGCgCCACUCGUa-------GGCCA- -5'
5885 5' -62.4 NC_001806.1 + 96376 0.68 0.550546
Target:  5'- gCCaGGGCgcccccGCGCGG-GGGCG-CCGGUg -3'
miRNA:   3'- gGGgCCCG------UGCGCCaCUCGUaGGCCA- -5'
5885 5' -62.4 NC_001806.1 + 22635 0.68 0.541069
Target:  5'- -aCCGGGCgagcGCGCGGUGc-CcgCCGGg -3'
miRNA:   3'- ggGGCCCG----UGCGCCACucGuaGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.