miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5898 3' -56.8 NC_001806.1 + 151579 0.66 0.862629
Target:  5'- uGGCGGCGGcGGCg-GGCCAUGgagaCAGAg -3'
miRNA:   3'- uCCGCUGCC-UCGagCUGGUGCa---GUUU- -5'
5898 3' -56.8 NC_001806.1 + 151452 0.7 0.66933
Target:  5'- cGGCGGCGGGGC--GGCCGCGg---- -3'
miRNA:   3'- uCCGCUGCCUCGagCUGGUGCaguuu -5'
5898 3' -56.8 NC_001806.1 + 151334 0.68 0.786755
Target:  5'- cGGGCGG-GGGGCUgucCGGCCAguCGUCGu- -3'
miRNA:   3'- -UCCGCUgCCUCGA---GCUGGU--GCAGUuu -5'
5898 3' -56.8 NC_001806.1 + 147713 0.66 0.847046
Target:  5'- gAGGCGgcgcucgcacgcACGGGGCcaCGGCCGCG-CGGGg -3'
miRNA:   3'- -UCCGC------------UGCCUCGa-GCUGGUGCaGUUU- -5'
5898 3' -56.8 NC_001806.1 + 147476 0.66 0.87738
Target:  5'- gAGGCGGCGGAggggaGCggGGCgGCGcCGGAg -3'
miRNA:   3'- -UCCGCUGCCU-----CGagCUGgUGCaGUUU- -5'
5898 3' -56.8 NC_001806.1 + 146985 0.66 0.854938
Target:  5'- aAGGCGACaGGGC--GACCACGcUAGAg -3'
miRNA:   3'- -UCCGCUGcCUCGagCUGGUGCaGUUU- -5'
5898 3' -56.8 NC_001806.1 + 127903 0.72 0.567356
Target:  5'- cGGGUGcaGCGGAGCaCGGCCAUGcCGAGg -3'
miRNA:   3'- -UCCGC--UGCCUCGaGCUGGUGCaGUUU- -5'
5898 3' -56.8 NC_001806.1 + 122361 0.67 0.830682
Target:  5'- uGGCGcgcugGCGGAagugGCgcaCGGCCGCGUCGc- -3'
miRNA:   3'- uCCGC-----UGCCU----CGa--GCUGGUGCAGUuu -5'
5898 3' -56.8 NC_001806.1 + 120339 0.69 0.688611
Target:  5'- gGGGCGGCGGGucgucccGCUCGGCgACGa---- -3'
miRNA:   3'- -UCCGCUGCCU-------CGAGCUGgUGCaguuu -5'
5898 3' -56.8 NC_001806.1 + 113032 0.66 0.87738
Target:  5'- cGGCGGuCgGGGGCcuuaaccgCGACCcCGUCGAAg -3'
miRNA:   3'- uCCGCU-G-CCUCGa-------GCUGGuGCAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 103820 0.67 0.804803
Target:  5'- cGGCGACGG-GCUCG-CUggGUCc-- -3'
miRNA:   3'- uCCGCUGCCuCGAGCuGGugCAGuuu -5'
5898 3' -56.8 NC_001806.1 + 103099 0.66 0.870112
Target:  5'- cGGCGcucgauaucgacGgGGAGCUCGGCCGCcugCAu- -3'
miRNA:   3'- uCCGC------------UgCCUCGAGCUGGUGca-GUuu -5'
5898 3' -56.8 NC_001806.1 + 101939 0.66 0.883038
Target:  5'- aGGGCGGCcaggccgGGAaacagcugggucaGCUCGACCGCcggGUCGGc -3'
miRNA:   3'- -UCCGCUG-------CCU-------------CGAGCUGGUG---CAGUUu -5'
5898 3' -56.8 NC_001806.1 + 100819 0.66 0.884431
Target:  5'- cAGGUGGCGaaaGGGCgcgaUGGCgGCGUCGAGa -3'
miRNA:   3'- -UCCGCUGC---CUCGa---GCUGgUGCAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 98639 0.7 0.659134
Target:  5'- uGGGCGGCGuGGuaUCGGCCGUGUCGGg -3'
miRNA:   3'- -UCCGCUGC-CUcgAGCUGGUGCAGUUu -5'
5898 3' -56.8 NC_001806.1 + 98038 0.66 0.847046
Target:  5'- cGGCGggugagcgcGCGGAuGCUCGGCgACGUgAu- -3'
miRNA:   3'- uCCGC---------UGCCU-CGAGCUGgUGCAgUuu -5'
5898 3' -56.8 NC_001806.1 + 95326 0.67 0.838958
Target:  5'- aGGGCGGCGcGGGCccCGACgACGaCGGGg -3'
miRNA:   3'- -UCCGCUGC-CUCGa-GCUGgUGCaGUUU- -5'
5898 3' -56.8 NC_001806.1 + 95076 0.7 0.659134
Target:  5'- cGGCgGGCGGAGCauuUCGAUCGCGcguUCGGGa -3'
miRNA:   3'- uCCG-CUGCCUCG---AGCUGGUGC---AGUUU- -5'
5898 3' -56.8 NC_001806.1 + 86068 0.69 0.698695
Target:  5'- gGGGCGGCGGcgucuAGCUCGcggagggcggccaGCCGCG-CGAc -3'
miRNA:   3'- -UCCGCUGCC-----UCGAGC-------------UGGUGCaGUUu -5'
5898 3' -56.8 NC_001806.1 + 85744 0.71 0.607994
Target:  5'- -uGCGGucCGGAGCcgcgCGGCCACGUCGu- -3'
miRNA:   3'- ucCGCU--GCCUCGa---GCUGGUGCAGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.