miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5898 3' -56.8 NC_001806.1 + 2612 0.72 0.537329
Target:  5'- cGGGUGGucCGuGAGCUCGGCCACGgcgcgCGGGg -3'
miRNA:   3'- -UCCGCU--GC-CUCGAGCUGGUGCa----GUUU- -5'
5898 3' -56.8 NC_001806.1 + 2996 0.69 0.689622
Target:  5'- gAGGCGGCGGcGGCcgccagcgcgUCGGCgGCGUCc-- -3'
miRNA:   3'- -UCCGCUGCC-UCG----------AGCUGgUGCAGuuu -5'
5898 3' -56.8 NC_001806.1 + 3099 0.7 0.62845
Target:  5'- cGGCGgccGCGGAGCUCGGCagGCG-CGGGu -3'
miRNA:   3'- uCCGC---UGCCUCGAGCUGg-UGCaGUUU- -5'
5898 3' -56.8 NC_001806.1 + 3633 0.7 0.659134
Target:  5'- cGGCGGCGGcgacGGCggCGACCcccuCGUCAu- -3'
miRNA:   3'- uCCGCUGCC----UCGa-GCUGGu---GCAGUuu -5'
5898 3' -56.8 NC_001806.1 + 3672 0.69 0.72956
Target:  5'- cGGCGcCGGGGCUCcccgcGGCCccCGUCAGc -3'
miRNA:   3'- uCCGCuGCCUCGAG-----CUGGu-GCAGUUu -5'
5898 3' -56.8 NC_001806.1 + 6216 0.67 0.804803
Target:  5'- aGGGcCGuCGGAGCg-GACgGCGUCGGc -3'
miRNA:   3'- -UCC-GCuGCCUCGagCUGgUGCAGUUu -5'
5898 3' -56.8 NC_001806.1 + 9227 0.66 0.847046
Target:  5'- uGGCGA-GGGGCgggCGGUCAUGUCGGGg -3'
miRNA:   3'- uCCGCUgCCUCGa--GCUGGUGCAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 11540 0.69 0.719679
Target:  5'- cGGGCGACgGGAGCgUCGguaGCgGCGUUGAc -3'
miRNA:   3'- -UCCGCUG-CCUCG-AGC---UGgUGCAGUUu -5'
5898 3' -56.8 NC_001806.1 + 18461 0.72 0.517618
Target:  5'- cGGGCGuuccACGGAGCugguaUCGGCCACGaccgCAGAc -3'
miRNA:   3'- -UCCGC----UGCCUCG-----AGCUGGUGCa---GUUU- -5'
5898 3' -56.8 NC_001806.1 + 20430 0.68 0.786755
Target:  5'- cGGGCGcGCGGGGCUCGuaucucauuACCGCcgaaccgggaaGUCGGGg -3'
miRNA:   3'- -UCCGC-UGCCUCGAGC---------UGGUG-----------CAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 21626 0.69 0.72956
Target:  5'- cGGUGGCGGccaucGGCgucaUCGACCuCGUCGGAc -3'
miRNA:   3'- uCCGCUGCC-----UCG----AGCUGGuGCAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 24899 0.69 0.709723
Target:  5'- gGGGCGgagGCGG-GCUUGGCCACGcCc-- -3'
miRNA:   3'- -UCCGC---UGCCuCGAGCUGGUGCaGuuu -5'
5898 3' -56.8 NC_001806.1 + 25907 0.66 0.884431
Target:  5'- cGGGCGGCGGuccgGGCggCGugCGCG-CGc- -3'
miRNA:   3'- -UCCGCUGCC----UCGa-GCugGUGCaGUuu -5'
5898 3' -56.8 NC_001806.1 + 25941 0.76 0.357119
Target:  5'- cGGGCGugGGGGCggGGCCGCGggagCGGGg -3'
miRNA:   3'- -UCCGCugCCUCGagCUGGUGCa---GUUU- -5'
5898 3' -56.8 NC_001806.1 + 27290 0.7 0.659134
Target:  5'- cAGcGCGGCGGGGCcCGGCCaaccaGCGUCc-- -3'
miRNA:   3'- -UC-CGCUGCCUCGaGCUGG-----UGCAGuuu -5'
5898 3' -56.8 NC_001806.1 + 35512 0.71 0.618217
Target:  5'- gAGGCGuCGGAGCggGGCCGC-UCAc- -3'
miRNA:   3'- -UCCGCuGCCUCGagCUGGUGcAGUuu -5'
5898 3' -56.8 NC_001806.1 + 37810 0.69 0.699701
Target:  5'- cGGGCGGgGGGGCaaUCG-CCAgCGUCAu- -3'
miRNA:   3'- -UCCGCUgCCUCG--AGCuGGU-GCAGUuu -5'
5898 3' -56.8 NC_001806.1 + 41258 0.66 0.87738
Target:  5'- aAGGgGACGG-GCUCcuucagGGCgAUGUCGAGa -3'
miRNA:   3'- -UCCgCUGCCuCGAG------CUGgUGCAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 44525 0.68 0.786755
Target:  5'- cGGGCGACGGA---CGACaAUGUCGAAa -3'
miRNA:   3'- -UCCGCUGCCUcgaGCUGgUGCAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 55025 0.67 0.795853
Target:  5'- uAGGCGGCGGc---CGugCACGUCGc- -3'
miRNA:   3'- -UCCGCUGCCucgaGCugGUGCAGUuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.