miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5898 3' -56.8 NC_001806.1 + 57826 0.66 0.847046
Target:  5'- cGGGCGGgGGuGCggugggCGACCcCGUCu-- -3'
miRNA:   3'- -UCCGCUgCCuCGa-----GCUGGuGCAGuuu -5'
5898 3' -56.8 NC_001806.1 + 63259 0.66 0.870112
Target:  5'- cGGCGucGCGGAGC-CGcCCAaaGUCAAAc -3'
miRNA:   3'- uCCGC--UGCCUCGaGCuGGUg-CAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 63727 0.67 0.793139
Target:  5'- cGGCGAggacccccuucaucCGGAGCaCGGCCcgcACGUCGGu -3'
miRNA:   3'- uCCGCU--------------GCCUCGaGCUGG---UGCAGUUu -5'
5898 3' -56.8 NC_001806.1 + 64486 0.66 0.874499
Target:  5'- aAGGCGAgCGGAccggcucaccagcgGCUUGaacccguugaccaGCCGCGUCAc- -3'
miRNA:   3'- -UCCGCU-GCCU--------------CGAGC-------------UGGUGCAGUuu -5'
5898 3' -56.8 NC_001806.1 + 68588 0.68 0.777517
Target:  5'- cGGCGGCccuGGGGC-CGGuCCGCGUCc-- -3'
miRNA:   3'- uCCGCUG---CCUCGaGCU-GGUGCAGuuu -5'
5898 3' -56.8 NC_001806.1 + 71936 0.68 0.786755
Target:  5'- gGGGCGAgUGGAcGCgcgCGACCGCGg---- -3'
miRNA:   3'- -UCCGCU-GCCU-CGa--GCUGGUGCaguuu -5'
5898 3' -56.8 NC_001806.1 + 76740 0.67 0.802134
Target:  5'- aAGGCG-CGcGAGCUCGacgugcaggcggucGCCugGUUGGAa -3'
miRNA:   3'- -UCCGCuGC-CUCGAGC--------------UGGugCAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 81356 0.68 0.786755
Target:  5'- cAGGCGGcCGGGGCgUCGcCCGCGa---- -3'
miRNA:   3'- -UCCGCU-GCCUCG-AGCuGGUGCaguuu -5'
5898 3' -56.8 NC_001806.1 + 81970 0.7 0.659134
Target:  5'- cGGCGACGGGuaauagccuGCUCGGCgGCG-CGGc -3'
miRNA:   3'- uCCGCUGCCU---------CGAGCUGgUGCaGUUu -5'
5898 3' -56.8 NC_001806.1 + 85744 0.71 0.607994
Target:  5'- -uGCGGucCGGAGCcgcgCGGCCACGUCGu- -3'
miRNA:   3'- ucCGCU--GCCUCGa---GCUGGUGCAGUuu -5'
5898 3' -56.8 NC_001806.1 + 86068 0.69 0.698695
Target:  5'- gGGGCGGCGGcgucuAGCUCGcggagggcggccaGCCGCG-CGAc -3'
miRNA:   3'- -UCCGCUGCC-----UCGAGC-------------UGGUGCaGUUu -5'
5898 3' -56.8 NC_001806.1 + 95076 0.7 0.659134
Target:  5'- cGGCgGGCGGAGCauuUCGAUCGCGcguUCGGGa -3'
miRNA:   3'- uCCG-CUGCCUCG---AGCUGGUGC---AGUUU- -5'
5898 3' -56.8 NC_001806.1 + 95326 0.67 0.838958
Target:  5'- aGGGCGGCGcGGGCccCGACgACGaCGGGg -3'
miRNA:   3'- -UCCGCUGC-CUCGa-GCUGgUGCaGUUU- -5'
5898 3' -56.8 NC_001806.1 + 98038 0.66 0.847046
Target:  5'- cGGCGggugagcgcGCGGAuGCUCGGCgACGUgAu- -3'
miRNA:   3'- uCCGC---------UGCCU-CGAGCUGgUGCAgUuu -5'
5898 3' -56.8 NC_001806.1 + 98639 0.7 0.659134
Target:  5'- uGGGCGGCGuGGuaUCGGCCGUGUCGGg -3'
miRNA:   3'- -UCCGCUGC-CUcgAGCUGGUGCAGUUu -5'
5898 3' -56.8 NC_001806.1 + 100819 0.66 0.884431
Target:  5'- cAGGUGGCGaaaGGGCgcgaUGGCgGCGUCGAGa -3'
miRNA:   3'- -UCCGCUGC---CUCGa---GCUGgUGCAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 101939 0.66 0.883038
Target:  5'- aGGGCGGCcaggccgGGAaacagcugggucaGCUCGACCGCcggGUCGGc -3'
miRNA:   3'- -UCCGCUG-------CCU-------------CGAGCUGGUG---CAGUUu -5'
5898 3' -56.8 NC_001806.1 + 103099 0.66 0.870112
Target:  5'- cGGCGcucgauaucgacGgGGAGCUCGGCCGCcugCAu- -3'
miRNA:   3'- uCCGC------------UgCCUCGAGCUGGUGca-GUuu -5'
5898 3' -56.8 NC_001806.1 + 103820 0.67 0.804803
Target:  5'- cGGCGACGG-GCUCG-CUggGUCc-- -3'
miRNA:   3'- uCCGCUGCCuCGAGCuGGugCAGuuu -5'
5898 3' -56.8 NC_001806.1 + 113032 0.66 0.87738
Target:  5'- cGGCGGuCgGGGGCcuuaaccgCGACCcCGUCGAAg -3'
miRNA:   3'- uCCGCU-G-CCUCGa-------GCUGGuGCAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.