Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5898 | 3' | -56.8 | NC_001806.1 | + | 21626 | 0.69 | 0.72956 |
Target: 5'- cGGUGGCGGccaucGGCgucaUCGACCuCGUCGGAc -3' miRNA: 3'- uCCGCUGCC-----UCG----AGCUGGuGCAGUUU- -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 68588 | 0.68 | 0.777517 |
Target: 5'- cGGCGGCccuGGGGC-CGGuCCGCGUCc-- -3' miRNA: 3'- uCCGCUG---CCUCGaGCU-GGUGCAGuuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 71936 | 0.68 | 0.786755 |
Target: 5'- gGGGCGAgUGGAcGCgcgCGACCGCGg---- -3' miRNA: 3'- -UCCGCU-GCCU-CGa--GCUGGUGCaguuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 151334 | 0.68 | 0.786755 |
Target: 5'- cGGGCGG-GGGGCUgucCGGCCAguCGUCGu- -3' miRNA: 3'- -UCCGCUgCCUCGA---GCUGGU--GCAGUuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 81356 | 0.68 | 0.786755 |
Target: 5'- cAGGCGGcCGGGGCgUCGcCCGCGa---- -3' miRNA: 3'- -UCCGCU-GCCUCG-AGCuGGUGCaguuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 20430 | 0.68 | 0.786755 |
Target: 5'- cGGGCGcGCGGGGCUCGuaucucauuACCGCcgaaccgggaaGUCGGGg -3' miRNA: 3'- -UCCGC-UGCCUCGAGC---------UGGUG-----------CAGUUU- -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 44525 | 0.68 | 0.786755 |
Target: 5'- cGGGCGACGGA---CGACaAUGUCGAAa -3' miRNA: 3'- -UCCGCUGCCUcgaGCUGgUGCAGUUU- -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 63727 | 0.67 | 0.793139 |
Target: 5'- cGGCGAggacccccuucaucCGGAGCaCGGCCcgcACGUCGGu -3' miRNA: 3'- uCCGCU--------------GCCUCGaGCUGG---UGCAGUUu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 55025 | 0.67 | 0.795853 |
Target: 5'- uAGGCGGCGGc---CGugCACGUCGc- -3' miRNA: 3'- -UCCGCUGCCucgaGCugGUGCAGUuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 76740 | 0.67 | 0.802134 |
Target: 5'- aAGGCG-CGcGAGCUCGacgugcaggcggucGCCugGUUGGAa -3' miRNA: 3'- -UCCGCuGC-CUCGAGC--------------UGGugCAGUUU- -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 103820 | 0.67 | 0.804803 |
Target: 5'- cGGCGACGG-GCUCG-CUggGUCc-- -3' miRNA: 3'- uCCGCUGCCuCGAGCuGGugCAGuuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 6216 | 0.67 | 0.804803 |
Target: 5'- aGGGcCGuCGGAGCg-GACgGCGUCGGc -3' miRNA: 3'- -UCC-GCuGCCUCGagCUGgUGCAGUUu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 122361 | 0.67 | 0.830682 |
Target: 5'- uGGCGcgcugGCGGAagugGCgcaCGGCCGCGUCGc- -3' miRNA: 3'- uCCGC-----UGCCU----CGa--GCUGGUGCAGUuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 95326 | 0.67 | 0.838958 |
Target: 5'- aGGGCGGCGcGGGCccCGACgACGaCGGGg -3' miRNA: 3'- -UCCGCUGC-CUCGa-GCUGgUGCaGUUU- -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 57826 | 0.66 | 0.847046 |
Target: 5'- cGGGCGGgGGuGCggugggCGACCcCGUCu-- -3' miRNA: 3'- -UCCGCUgCCuCGa-----GCUGGuGCAGuuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 9227 | 0.66 | 0.847046 |
Target: 5'- uGGCGA-GGGGCgggCGGUCAUGUCGGGg -3' miRNA: 3'- uCCGCUgCCUCGa--GCUGGUGCAGUUU- -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 147713 | 0.66 | 0.847046 |
Target: 5'- gAGGCGgcgcucgcacgcACGGGGCcaCGGCCGCG-CGGGg -3' miRNA: 3'- -UCCGC------------UGCCUCGa-GCUGGUGCaGUUU- -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 98038 | 0.66 | 0.847046 |
Target: 5'- cGGCGggugagcgcGCGGAuGCUCGGCgACGUgAu- -3' miRNA: 3'- uCCGC---------UGCCU-CGAGCUGgUGCAgUuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 146985 | 0.66 | 0.854938 |
Target: 5'- aAGGCGACaGGGC--GACCACGcUAGAg -3' miRNA: 3'- -UCCGCUGcCUCGagCUGGUGCaGUUU- -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 151579 | 0.66 | 0.862629 |
Target: 5'- uGGCGGCGGcGGCg-GGCCAUGgagaCAGAg -3' miRNA: 3'- uCCGCUGCC-UCGagCUGGUGCa---GUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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