Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5898 | 3' | -56.8 | NC_001806.1 | + | 55025 | 0.67 | 0.795853 |
Target: 5'- uAGGCGGCGGc---CGugCACGUCGc- -3' miRNA: 3'- -UCCGCUGCCucgaGCugGUGCAGUuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 63727 | 0.67 | 0.793139 |
Target: 5'- cGGCGAggacccccuucaucCGGAGCaCGGCCcgcACGUCGGu -3' miRNA: 3'- uCCGCU--------------GCCUCGaGCUGG---UGCAGUUu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 20430 | 0.68 | 0.786755 |
Target: 5'- cGGGCGcGCGGGGCUCGuaucucauuACCGCcgaaccgggaaGUCGGGg -3' miRNA: 3'- -UCCGC-UGCCUCGAGC---------UGGUG-----------CAGUUU- -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 44525 | 0.68 | 0.786755 |
Target: 5'- cGGGCGACGGA---CGACaAUGUCGAAa -3' miRNA: 3'- -UCCGCUGCCUcgaGCUGgUGCAGUUU- -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 81356 | 0.68 | 0.786755 |
Target: 5'- cAGGCGGcCGGGGCgUCGcCCGCGa---- -3' miRNA: 3'- -UCCGCU-GCCUCG-AGCuGGUGCaguuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 151334 | 0.68 | 0.786755 |
Target: 5'- cGGGCGG-GGGGCUgucCGGCCAguCGUCGu- -3' miRNA: 3'- -UCCGCUgCCUCGA---GCUGGU--GCAGUuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 71936 | 0.68 | 0.786755 |
Target: 5'- gGGGCGAgUGGAcGCgcgCGACCGCGg---- -3' miRNA: 3'- -UCCGCU-GCCU-CGa--GCUGGUGCaguuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 68588 | 0.68 | 0.777517 |
Target: 5'- cGGCGGCccuGGGGC-CGGuCCGCGUCc-- -3' miRNA: 3'- uCCGCUG---CCUCGaGCU-GGUGCAGuuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 21626 | 0.69 | 0.72956 |
Target: 5'- cGGUGGCGGccaucGGCgucaUCGACCuCGUCGGAc -3' miRNA: 3'- uCCGCUGCC-----UCG----AGCUGGuGCAGUUU- -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 3672 | 0.69 | 0.72956 |
Target: 5'- cGGCGcCGGGGCUCcccgcGGCCccCGUCAGc -3' miRNA: 3'- uCCGCuGCCUCGAG-----CUGGu-GCAGUUu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 11540 | 0.69 | 0.719679 |
Target: 5'- cGGGCGACgGGAGCgUCGguaGCgGCGUUGAc -3' miRNA: 3'- -UCCGCUG-CCUCG-AGC---UGgUGCAGUUu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 24899 | 0.69 | 0.709723 |
Target: 5'- gGGGCGgagGCGG-GCUUGGCCACGcCc-- -3' miRNA: 3'- -UCCGC---UGCCuCGAGCUGGUGCaGuuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 37810 | 0.69 | 0.699701 |
Target: 5'- cGGGCGGgGGGGCaaUCG-CCAgCGUCAu- -3' miRNA: 3'- -UCCGCUgCCUCG--AGCuGGU-GCAGUuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 86068 | 0.69 | 0.698695 |
Target: 5'- gGGGCGGCGGcgucuAGCUCGcggagggcggccaGCCGCG-CGAc -3' miRNA: 3'- -UCCGCUGCC-----UCGAGC-------------UGGUGCaGUUu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 2996 | 0.69 | 0.689622 |
Target: 5'- gAGGCGGCGGcGGCcgccagcgcgUCGGCgGCGUCc-- -3' miRNA: 3'- -UCCGCUGCC-UCG----------AGCUGgUGCAGuuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 120339 | 0.69 | 0.688611 |
Target: 5'- gGGGCGGCGGGucgucccGCUCGGCgACGa---- -3' miRNA: 3'- -UCCGCUGCCU-------CGAGCUGgUGCaguuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 151452 | 0.7 | 0.66933 |
Target: 5'- cGGCGGCGGGGC--GGCCGCGg---- -3' miRNA: 3'- uCCGCUGCCUCGagCUGGUGCaguuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 81970 | 0.7 | 0.659134 |
Target: 5'- cGGCGACGGGuaauagccuGCUCGGCgGCG-CGGc -3' miRNA: 3'- uCCGCUGCCU---------CGAGCUGgUGCaGUUu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 27290 | 0.7 | 0.659134 |
Target: 5'- cAGcGCGGCGGGGCcCGGCCaaccaGCGUCc-- -3' miRNA: 3'- -UC-CGCUGCCUCGaGCUGG-----UGCAGuuu -5' |
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5898 | 3' | -56.8 | NC_001806.1 | + | 3633 | 0.7 | 0.659134 |
Target: 5'- cGGCGGCGGcgacGGCggCGACCcccuCGUCAu- -3' miRNA: 3'- uCCGCUGCC----UCGa-GCUGGu---GCAGUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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