miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5898 5' -58 NC_001806.1 + 122443 0.76 0.310756
Target:  5'- ---cUCCGCGUGGUCCccgaggAGCACGGCg- -3'
miRNA:   3'- cgaaAGGUGCGCCAGG------UCGUGCCGga -5'
5898 5' -58 NC_001806.1 + 92899 0.75 0.347512
Target:  5'- gGCUgcggCCGCGUGGUCCGcGCAgGGCg- -3'
miRNA:   3'- -CGAaa--GGUGCGCCAGGU-CGUgCCGga -5'
5898 5' -58 NC_001806.1 + 100120 0.72 0.46594
Target:  5'- cGCccgCCugGCGGUCCgcGGCuAUGGCCc -3'
miRNA:   3'- -CGaaaGGugCGCCAGG--UCG-UGCCGGa -5'
5898 5' -58 NC_001806.1 + 83820 0.72 0.493959
Target:  5'- gGCggggUCgGCGCGGgaUCCGGCACGcaGCCg -3'
miRNA:   3'- -CGaa--AGgUGCGCC--AGGUCGUGC--CGGa -5'
5898 5' -58 NC_001806.1 + 91894 0.71 0.522722
Target:  5'- ----aCCAgGCGGUCCc-CACGGCCa -3'
miRNA:   3'- cgaaaGGUgCGCCAGGucGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 119462 0.71 0.522722
Target:  5'- cGCcg-CCACcCGGUCCgAGCGCGGaCCg -3'
miRNA:   3'- -CGaaaGGUGcGCCAGG-UCGUGCC-GGa -5'
5898 5' -58 NC_001806.1 + 144569 0.71 0.542253
Target:  5'- aCUUUCCGgGCGcGUCCGGgugcCGCGGCUc -3'
miRNA:   3'- cGAAAGGUgCGC-CAGGUC----GUGCCGGa -5'
5898 5' -58 NC_001806.1 + 56842 0.71 0.552109
Target:  5'- ----aCCGcCGCGG-CCAGgGCGGCCg -3'
miRNA:   3'- cgaaaGGU-GCGCCaGGUCgUGCCGGa -5'
5898 5' -58 NC_001806.1 + 32547 0.71 0.571976
Target:  5'- ----cCCugGCGGucuUCCAGC-CGGCCc -3'
miRNA:   3'- cgaaaGGugCGCC---AGGUCGuGCCGGa -5'
5898 5' -58 NC_001806.1 + 85740 0.71 0.571976
Target:  5'- ----aCCcUGCGGUCCGgagccGCGCGGCCa -3'
miRNA:   3'- cgaaaGGuGCGCCAGGU-----CGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 109884 0.71 0.571976
Target:  5'- gGCga-CCACGCGGUCgu-CugGGCCUg -3'
miRNA:   3'- -CGaaaGGUGCGCCAGgucGugCCGGA- -5'
5898 5' -58 NC_001806.1 + 73711 0.7 0.612155
Target:  5'- aGCUgcagcUUCGCGCGGcCCcGC-CGGCCa -3'
miRNA:   3'- -CGAa----AGGUGCGCCaGGuCGuGCCGGa -5'
5898 5' -58 NC_001806.1 + 5347 0.7 0.622254
Target:  5'- cGCUUcgUCCGCGUaucGGcgucCCGGCGCGGCg- -3'
miRNA:   3'- -CGAA--AGGUGCG---CCa---GGUCGUGCCGga -5'
5898 5' -58 NC_001806.1 + 4834 0.7 0.626296
Target:  5'- gGCgaggCCGCGgGGUCgGGCgucgggaucguccggACGGCCUc -3'
miRNA:   3'- -CGaaa-GGUGCgCCAGgUCG---------------UGCCGGA- -5'
5898 5' -58 NC_001806.1 + 70002 0.69 0.642466
Target:  5'- cGCUgagggCCACGUG---UAGCGCGGCCUa -3'
miRNA:   3'- -CGAaa---GGUGCGCcagGUCGUGCCGGA- -5'
5898 5' -58 NC_001806.1 + 75238 0.69 0.652564
Target:  5'- cGCguccuggUCgACGCGGUgacggCCcugGGCGCGGCCg -3'
miRNA:   3'- -CGaa-----AGgUGCGCCA-----GG---UCGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 5269 0.69 0.652564
Target:  5'- cGCcgUCgACGCGGaaCUAGCGCGGaCCg -3'
miRNA:   3'- -CGaaAGgUGCGCCa-GGUCGUGCC-GGa -5'
5898 5' -58 NC_001806.1 + 73937 0.69 0.652564
Target:  5'- cGCggggUCgACGCGGUCucaCAGCACgccgGGCCc -3'
miRNA:   3'- -CGaa--AGgUGCGCCAG---GUCGUG----CCGGa -5'
5898 5' -58 NC_001806.1 + 93423 0.69 0.662646
Target:  5'- aGCUgaCCGCGCGuGcCCuggAGCGCGGCa- -3'
miRNA:   3'- -CGAaaGGUGCGC-CaGG---UCGUGCCGga -5'
5898 5' -58 NC_001806.1 + 118946 0.68 0.692715
Target:  5'- --cUUCCGCGUGcGUCCAGCGcCGGg-- -3'
miRNA:   3'- cgaAAGGUGCGC-CAGGUCGU-GCCgga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.