miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5898 5' -58 NC_001806.1 + 1727 0.67 0.797364
Target:  5'- gGCcgUCCAgCGcCGG--CAGCACGGCCc -3'
miRNA:   3'- -CGaaAGGU-GC-GCCagGUCGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 3461 0.68 0.741727
Target:  5'- ----gCCACGCGGccggCCugGGCGCGGCg- -3'
miRNA:   3'- cgaaaGGUGCGCCa---GG--UCGUGCCGga -5'
5898 5' -58 NC_001806.1 + 4329 0.68 0.702651
Target:  5'- gGCcaccgCCGCGCGGgcCCGGCggcgcucgauGCGGCCc -3'
miRNA:   3'- -CGaaa--GGUGCGCCa-GGUCG----------UGCCGGa -5'
5898 5' -58 NC_001806.1 + 4688 0.68 0.712529
Target:  5'- gGCggUCCGUGgGGUCCGGaUACGcGCCg -3'
miRNA:   3'- -CGaaAGGUGCgCCAGGUC-GUGC-CGGa -5'
5898 5' -58 NC_001806.1 + 4834 0.7 0.626296
Target:  5'- gGCgaggCCGCGgGGUCgGGCgucgggaucguccggACGGCCUc -3'
miRNA:   3'- -CGaaa-GGUGCgCCAGgUCG---------------UGCCGGA- -5'
5898 5' -58 NC_001806.1 + 5269 0.69 0.652564
Target:  5'- cGCcgUCgACGCGGaaCUAGCGCGGaCCg -3'
miRNA:   3'- -CGaaAGgUGCGCCa-GGUCGUGCC-GGa -5'
5898 5' -58 NC_001806.1 + 5347 0.7 0.622254
Target:  5'- cGCUUcgUCCGCGUaucGGcgucCCGGCGCGGCg- -3'
miRNA:   3'- -CGAA--AGGUGCG---CCa---GGUCGUGCCGga -5'
5898 5' -58 NC_001806.1 + 24010 0.66 0.823334
Target:  5'- cCUggCCAaccggcugUGCGGgCCGGaCACGGCCg -3'
miRNA:   3'- cGAaaGGU--------GCGCCaGGUC-GUGCCGGa -5'
5898 5' -58 NC_001806.1 + 24108 0.68 0.721362
Target:  5'- uGCUgUCCACGCGGgacCUGGCcuucgccGgGGCCg -3'
miRNA:   3'- -CGAaAGGUGCGCCa--GGUCG-------UgCCGGa -5'
5898 5' -58 NC_001806.1 + 27270 0.68 0.732076
Target:  5'- aCUggCCAaucgGCGGccgCCAGCGCGGCg- -3'
miRNA:   3'- cGAaaGGUg---CGCCa--GGUCGUGCCGga -5'
5898 5' -58 NC_001806.1 + 27581 0.68 0.702651
Target:  5'- uGCUUUUUugGCGGaaCA-CACGGCCc -3'
miRNA:   3'- -CGAAAGGugCGCCagGUcGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 30214 0.68 0.702651
Target:  5'- ----cCCGCGCGccCCcGCGCGGCCg -3'
miRNA:   3'- cgaaaGGUGCGCcaGGuCGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 30896 0.68 0.712529
Target:  5'- cGCg--CCACGCGGagacuUCCggGGCcguccccgcggGCGGCCUa -3'
miRNA:   3'- -CGaaaGGUGCGCC-----AGG--UCG-----------UGCCGGA- -5'
5898 5' -58 NC_001806.1 + 32547 0.71 0.571976
Target:  5'- ----cCCugGCGGucuUCCAGC-CGGCCc -3'
miRNA:   3'- cgaaaGGugCGCC---AGGUCGuGCCGGa -5'
5898 5' -58 NC_001806.1 + 36553 0.68 0.702651
Target:  5'- cGCUggUCUcacaggagGCGCGGaCCAgguaacuccGCACGGCCa -3'
miRNA:   3'- -CGAa-AGG--------UGCGCCaGGU---------CGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 42017 0.67 0.77931
Target:  5'- uGCUggCCGCGgGGUUgGGgucgugggucguCACGGCCc -3'
miRNA:   3'- -CGAaaGGUGCgCCAGgUC------------GUGCCGGa -5'
5898 5' -58 NC_001806.1 + 42966 0.66 0.84778
Target:  5'- uCUUgCUcCGUGGgcccgUCGGCACGGCCa -3'
miRNA:   3'- cGAAaGGuGCGCCa----GGUCGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 43533 0.66 0.839813
Target:  5'- gGCg--CCugGCGGacaCguGUAUGGCCa -3'
miRNA:   3'- -CGaaaGGugCGCCa--GguCGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 46419 0.67 0.770085
Target:  5'- cGCgucUUCUGCgccGCGGUCgGGCgccugGCGGCCa -3'
miRNA:   3'- -CGa--AAGGUG---CGCCAGgUCG-----UGCCGGa -5'
5898 5' -58 NC_001806.1 + 49430 0.68 0.712529
Target:  5'- --gUUCCcCGCGGUCCuccGCA-GGCCc -3'
miRNA:   3'- cgaAAGGuGCGCCAGGu--CGUgCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.