miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5898 5' -58 NC_001806.1 + 50880 0.68 0.72234
Target:  5'- cGCcaagUUCUggGCGGacUCC-GCGCGGCCg -3'
miRNA:   3'- -CGa---AAGGugCGCC--AGGuCGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 52545 0.67 0.797364
Target:  5'- ----aCgACGUGGUCC-GCGgGGCCUc -3'
miRNA:   3'- cgaaaGgUGCGCCAGGuCGUgCCGGA- -5'
5898 5' -58 NC_001806.1 + 52720 0.67 0.797364
Target:  5'- gGCg--CCGCGCGGa-CGGCGCggGGCCc -3'
miRNA:   3'- -CGaaaGGUGCGCCagGUCGUG--CCGGa -5'
5898 5' -58 NC_001806.1 + 56842 0.71 0.552109
Target:  5'- ----aCCGcCGCGG-CCAGgGCGGCCg -3'
miRNA:   3'- cgaaaGGU-GCGCCaGGUCgUGCCGGa -5'
5898 5' -58 NC_001806.1 + 61527 0.66 0.831662
Target:  5'- aGCccguaCACGCGGUCgGGCGgGGgCUu -3'
miRNA:   3'- -CGaaag-GUGCGCCAGgUCGUgCCgGA- -5'
5898 5' -58 NC_001806.1 + 64148 0.67 0.770085
Target:  5'- cGCaugCCGCGCguGGcCCGGCA-GGCCa -3'
miRNA:   3'- -CGaaaGGUGCG--CCaGGUCGUgCCGGa -5'
5898 5' -58 NC_001806.1 + 70002 0.69 0.642466
Target:  5'- cGCUgagggCCACGUG---UAGCGCGGCCUa -3'
miRNA:   3'- -CGAaa---GGUGCGCcagGUCGUGCCGGA- -5'
5898 5' -58 NC_001806.1 + 73711 0.7 0.612155
Target:  5'- aGCUgcagcUUCGCGCGGcCCcGC-CGGCCa -3'
miRNA:   3'- -CGAa----AGGUGCGCCaGGuCGuGCCGGa -5'
5898 5' -58 NC_001806.1 + 73937 0.69 0.652564
Target:  5'- cGCggggUCgACGCGGUCucaCAGCACgccgGGCCc -3'
miRNA:   3'- -CGaa--AGgUGCGCCAG---GUCGUG----CCGGa -5'
5898 5' -58 NC_001806.1 + 74314 0.67 0.778393
Target:  5'- gGCcaUCCuguUGCGGgaucugaUCCAGCGgGGCCa -3'
miRNA:   3'- -CGaaAGGu--GCGCC-------AGGUCGUgCCGGa -5'
5898 5' -58 NC_001806.1 + 75238 0.69 0.652564
Target:  5'- cGCguccuggUCgACGCGGUgacggCCcugGGCGCGGCCg -3'
miRNA:   3'- -CGaa-----AGgUGCGCCA-----GG---UCGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 76570 0.67 0.760741
Target:  5'- uGCUggCCGCGCgcgagcgccgGGcCCAGCucgaGGCCg -3'
miRNA:   3'- -CGAaaGGUGCG----------CCaGGUCGug--CCGGa -5'
5898 5' -58 NC_001806.1 + 76810 0.67 0.751285
Target:  5'- cGCUaa--GCGCGG-CCAGCggcgACGGCCc -3'
miRNA:   3'- -CGAaaggUGCGCCaGGUCG----UGCCGGa -5'
5898 5' -58 NC_001806.1 + 78202 0.67 0.788406
Target:  5'- ---aUCCGCGUGcugCCAGCGuuuuCGGCCg -3'
miRNA:   3'- cgaaAGGUGCGCca-GGUCGU----GCCGGa -5'
5898 5' -58 NC_001806.1 + 83820 0.72 0.493959
Target:  5'- gGCggggUCgGCGCGGgaUCCGGCACGcaGCCg -3'
miRNA:   3'- -CGaa--AGgUGCGCC--AGGUCGUGC--CGGa -5'
5898 5' -58 NC_001806.1 + 85740 0.71 0.571976
Target:  5'- ----aCCcUGCGGUCCGgagccGCGCGGCCa -3'
miRNA:   3'- cgaaaGGuGCGCCAGGU-----CGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 89529 0.68 0.732076
Target:  5'- aGCUg-CUGCGCGGcgccCCGGCcgGCGGCCc -3'
miRNA:   3'- -CGAaaGGUGCGCCa---GGUCG--UGCCGGa -5'
5898 5' -58 NC_001806.1 + 89560 0.68 0.702651
Target:  5'- gGUUUaUUCGCGuCGGcCCGGC-CGGCCg -3'
miRNA:   3'- -CGAA-AGGUGC-GCCaGGUCGuGCCGGa -5'
5898 5' -58 NC_001806.1 + 91143 0.66 0.826686
Target:  5'- ---cUCCGCGUGGccgcuguucgagggCCAGgaCACGGCCg -3'
miRNA:   3'- cgaaAGGUGCGCCa-------------GGUC--GUGCCGGa -5'
5898 5' -58 NC_001806.1 + 91894 0.71 0.522722
Target:  5'- ----aCCAgGCGGUCCc-CACGGCCa -3'
miRNA:   3'- cgaaaGGUgCGCCAGGucGUGCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.