miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5898 5' -58 NC_001806.1 + 148104 0.66 0.831662
Target:  5'- cGCUgUCCGagcCGCGG-CCGGCugGGg-- -3'
miRNA:   3'- -CGAaAGGU---GCGCCaGGUCGugCCgga -5'
5898 5' -58 NC_001806.1 + 147746 0.67 0.797364
Target:  5'- cGCgggggCGCGCgGGUCCcGaCGCGGCCg -3'
miRNA:   3'- -CGaaag-GUGCG-CCAGGuC-GUGCCGGa -5'
5898 5' -58 NC_001806.1 + 145726 0.66 0.806178
Target:  5'- cCUggCCGCGCGGgu--GCGCGuGCCUu -3'
miRNA:   3'- cGAaaGGUGCGCCagguCGUGC-CGGA- -5'
5898 5' -58 NC_001806.1 + 144569 0.71 0.542253
Target:  5'- aCUUUCCGgGCGcGUCCGGgugcCGCGGCUc -3'
miRNA:   3'- cGAAAGGUgCGC-CAGGUC----GUGCCGGa -5'
5898 5' -58 NC_001806.1 + 144348 0.66 0.831662
Target:  5'- cGCc--CCGCGcCGGUCCAuuaagggcGCGCGuGCCc -3'
miRNA:   3'- -CGaaaGGUGC-GCCAGGU--------CGUGC-CGGa -5'
5898 5' -58 NC_001806.1 + 139847 0.67 0.788406
Target:  5'- cGCcugCCGCGCGGaggcguuguuaUCCAGCACacccccauugGGCUg -3'
miRNA:   3'- -CGaaaGGUGCGCC-----------AGGUCGUG----------CCGGa -5'
5898 5' -58 NC_001806.1 + 135551 0.66 0.84778
Target:  5'- gGCUgccgcaUCCAC-CGGUCaCGGacuCGGCCg -3'
miRNA:   3'- -CGAa-----AGGUGcGCCAG-GUCgu-GCCGGa -5'
5898 5' -58 NC_001806.1 + 134913 0.66 0.806178
Target:  5'- ----aCCAggcUGCGGUCCccGGCgAUGGCCUg -3'
miRNA:   3'- cgaaaGGU---GCGCCAGG--UCG-UGCCGGA- -5'
5898 5' -58 NC_001806.1 + 134645 0.66 0.84778
Target:  5'- gGCUgUgCACGUGGUCCucguUGGCCg -3'
miRNA:   3'- -CGAaAgGUGCGCCAGGucguGCCGGa -5'
5898 5' -58 NC_001806.1 + 133265 0.67 0.797364
Target:  5'- uGCUUagggCCaACGCcGUCCGGCuGCGGCa- -3'
miRNA:   3'- -CGAAa---GG-UGCGcCAGGUCG-UGCCGga -5'
5898 5' -58 NC_001806.1 + 131959 0.66 0.830838
Target:  5'- cGCgugcgUCCugGCGGcCCuggAGCGCcagaccgGGCCg -3'
miRNA:   3'- -CGaa---AGGugCGCCaGG---UCGUG-------CCGGa -5'
5898 5' -58 NC_001806.1 + 128524 0.67 0.797364
Target:  5'- gGCauggCCAUGCGGgccgcagCCAGacgGCGGCCc -3'
miRNA:   3'- -CGaaa-GGUGCGCCa------GGUCg--UGCCGGa -5'
5898 5' -58 NC_001806.1 + 123235 0.67 0.788406
Target:  5'- uGCcgcCCACGCGGcCCuGCGCcgacgccuGGCCg -3'
miRNA:   3'- -CGaaaGGUGCGCCaGGuCGUG--------CCGGa -5'
5898 5' -58 NC_001806.1 + 122443 0.76 0.310756
Target:  5'- ---cUCCGCGUGGUCCccgaggAGCACGGCg- -3'
miRNA:   3'- cgaaAGGUGCGCCAGG------UCGUGCCGga -5'
5898 5' -58 NC_001806.1 + 119884 0.66 0.839813
Target:  5'- cGCccUCCGCuGCuGUCCucGGCGCuGGCCa -3'
miRNA:   3'- -CGaaAGGUG-CGcCAGG--UCGUG-CCGGa -5'
5898 5' -58 NC_001806.1 + 119462 0.71 0.522722
Target:  5'- cGCcg-CCACcCGGUCCgAGCGCGGaCCg -3'
miRNA:   3'- -CGaaaGGUGcGCCAGG-UCGUGCC-GGa -5'
5898 5' -58 NC_001806.1 + 118946 0.68 0.692715
Target:  5'- --cUUCCGCGUGcGUCCAGCGcCGGg-- -3'
miRNA:   3'- cgaAAGGUGCGC-CAGGUCGU-GCCgga -5'
5898 5' -58 NC_001806.1 + 116999 0.68 0.702651
Target:  5'- cGCgg-CCGuugUGCGGUCCGGagaCAUGGCCc -3'
miRNA:   3'- -CGaaaGGU---GCGCCAGGUC---GUGCCGGa -5'
5898 5' -58 NC_001806.1 + 109884 0.71 0.571976
Target:  5'- gGCga-CCACGCGGUCgu-CugGGCCUg -3'
miRNA:   3'- -CGaaaGGUGCGCCAGgucGugCCGGA- -5'
5898 5' -58 NC_001806.1 + 109168 0.66 0.831662
Target:  5'- ---gUCgGCGCGGggcuccUCCAGCGCccGGUCUg -3'
miRNA:   3'- cgaaAGgUGCGCC------AGGUCGUG--CCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.