Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5898 | 5' | -58 | NC_001806.1 | + | 30214 | 0.68 | 0.702651 |
Target: 5'- ----cCCGCGCGccCCcGCGCGGCCg -3' miRNA: 3'- cgaaaGGUGCGCcaGGuCGUGCCGGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 116999 | 0.68 | 0.702651 |
Target: 5'- cGCgg-CCGuugUGCGGUCCGGagaCAUGGCCc -3' miRNA: 3'- -CGaaaGGU---GCGCCAGGUC---GUGCCGGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 89560 | 0.68 | 0.702651 |
Target: 5'- gGUUUaUUCGCGuCGGcCCGGC-CGGCCg -3' miRNA: 3'- -CGAA-AGGUGC-GCCaGGUCGuGCCGGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 4329 | 0.68 | 0.702651 |
Target: 5'- gGCcaccgCCGCGCGGgcCCGGCggcgcucgauGCGGCCc -3' miRNA: 3'- -CGaaa--GGUGCGCCa-GGUCG----------UGCCGGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 36553 | 0.68 | 0.702651 |
Target: 5'- cGCUggUCUcacaggagGCGCGGaCCAgguaacuccGCACGGCCa -3' miRNA: 3'- -CGAa-AGG--------UGCGCCaGGU---------CGUGCCGGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 27581 | 0.68 | 0.702651 |
Target: 5'- uGCUUUUUugGCGGaaCA-CACGGCCc -3' miRNA: 3'- -CGAAAGGugCGCCagGUcGUGCCGGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 118946 | 0.68 | 0.692715 |
Target: 5'- --cUUCCGCGUGcGUCCAGCGcCGGg-- -3' miRNA: 3'- cgaAAGGUGCGC-CAGGUCGU-GCCgga -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 93423 | 0.69 | 0.662646 |
Target: 5'- aGCUgaCCGCGCGuGcCCuggAGCGCGGCa- -3' miRNA: 3'- -CGAaaGGUGCGC-CaGG---UCGUGCCGga -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 75238 | 0.69 | 0.652564 |
Target: 5'- cGCguccuggUCgACGCGGUgacggCCcugGGCGCGGCCg -3' miRNA: 3'- -CGaa-----AGgUGCGCCA-----GG---UCGUGCCGGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 73937 | 0.69 | 0.652564 |
Target: 5'- cGCggggUCgACGCGGUCucaCAGCACgccgGGCCc -3' miRNA: 3'- -CGaa--AGgUGCGCCAG---GUCGUG----CCGGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 5269 | 0.69 | 0.652564 |
Target: 5'- cGCcgUCgACGCGGaaCUAGCGCGGaCCg -3' miRNA: 3'- -CGaaAGgUGCGCCa-GGUCGUGCC-GGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 70002 | 0.69 | 0.642466 |
Target: 5'- cGCUgagggCCACGUG---UAGCGCGGCCUa -3' miRNA: 3'- -CGAaa---GGUGCGCcagGUCGUGCCGGA- -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 4834 | 0.7 | 0.626296 |
Target: 5'- gGCgaggCCGCGgGGUCgGGCgucgggaucguccggACGGCCUc -3' miRNA: 3'- -CGaaa-GGUGCgCCAGgUCG---------------UGCCGGA- -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 5347 | 0.7 | 0.622254 |
Target: 5'- cGCUUcgUCCGCGUaucGGcgucCCGGCGCGGCg- -3' miRNA: 3'- -CGAA--AGGUGCG---CCa---GGUCGUGCCGga -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 73711 | 0.7 | 0.612155 |
Target: 5'- aGCUgcagcUUCGCGCGGcCCcGC-CGGCCa -3' miRNA: 3'- -CGAa----AGGUGCGCCaGGuCGuGCCGGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 85740 | 0.71 | 0.571976 |
Target: 5'- ----aCCcUGCGGUCCGgagccGCGCGGCCa -3' miRNA: 3'- cgaaaGGuGCGCCAGGU-----CGUGCCGGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 109884 | 0.71 | 0.571976 |
Target: 5'- gGCga-CCACGCGGUCgu-CugGGCCUg -3' miRNA: 3'- -CGaaaGGUGCGCCAGgucGugCCGGA- -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 32547 | 0.71 | 0.571976 |
Target: 5'- ----cCCugGCGGucuUCCAGC-CGGCCc -3' miRNA: 3'- cgaaaGGugCGCC---AGGUCGuGCCGGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 56842 | 0.71 | 0.552109 |
Target: 5'- ----aCCGcCGCGG-CCAGgGCGGCCg -3' miRNA: 3'- cgaaaGGU-GCGCCaGGUCgUGCCGGa -5' |
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5898 | 5' | -58 | NC_001806.1 | + | 144569 | 0.71 | 0.542253 |
Target: 5'- aCUUUCCGgGCGcGUCCGGgugcCGCGGCUc -3' miRNA: 3'- cGAAAGGUgCGC-CAGGUC----GUGCCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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