miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5898 5' -58 NC_001806.1 + 52720 0.67 0.797364
Target:  5'- gGCg--CCGCGCGGa-CGGCGCggGGCCc -3'
miRNA:   3'- -CGaaaGGUGCGCCagGUCGUG--CCGGa -5'
5898 5' -58 NC_001806.1 + 147746 0.67 0.797364
Target:  5'- cGCgggggCGCGCgGGUCCcGaCGCGGCCg -3'
miRNA:   3'- -CGaaag-GUGCG-CCAGGuC-GUGCCGGa -5'
5898 5' -58 NC_001806.1 + 98714 0.67 0.788406
Target:  5'- uGUUggUCCugGcCGGcCUGGCGgCGGCCUu -3'
miRNA:   3'- -CGAa-AGGugC-GCCaGGUCGU-GCCGGA- -5'
5898 5' -58 NC_001806.1 + 78202 0.67 0.788406
Target:  5'- ---aUCCGCGUGcugCCAGCGuuuuCGGCCg -3'
miRNA:   3'- cgaaAGGUGCGCca-GGUCGU----GCCGGa -5'
5898 5' -58 NC_001806.1 + 123235 0.67 0.788406
Target:  5'- uGCcgcCCACGCGGcCCuGCGCcgacgccuGGCCg -3'
miRNA:   3'- -CGaaaGGUGCGCCaGGuCGUG--------CCGGa -5'
5898 5' -58 NC_001806.1 + 139847 0.67 0.788406
Target:  5'- cGCcugCCGCGCGGaggcguuguuaUCCAGCACacccccauugGGCUg -3'
miRNA:   3'- -CGaaaGGUGCGCC-----------AGGUCGUG----------CCGGa -5'
5898 5' -58 NC_001806.1 + 42017 0.67 0.77931
Target:  5'- uGCUggCCGCGgGGUUgGGgucgugggucguCACGGCCc -3'
miRNA:   3'- -CGAaaGGUGCgCCAGgUC------------GUGCCGGa -5'
5898 5' -58 NC_001806.1 + 74314 0.67 0.778393
Target:  5'- gGCcaUCCuguUGCGGgaucugaUCCAGCGgGGCCa -3'
miRNA:   3'- -CGaaAGGu--GCGCC-------AGGUCGUgCCGGa -5'
5898 5' -58 NC_001806.1 + 64148 0.67 0.770085
Target:  5'- cGCaugCCGCGCguGGcCCGGCA-GGCCa -3'
miRNA:   3'- -CGaaaGGUGCG--CCaGGUCGUgCCGGa -5'
5898 5' -58 NC_001806.1 + 46419 0.67 0.770085
Target:  5'- cGCgucUUCUGCgccGCGGUCgGGCgccugGCGGCCa -3'
miRNA:   3'- -CGa--AAGGUG---CGCCAGgUCG-----UGCCGGa -5'
5898 5' -58 NC_001806.1 + 76570 0.67 0.760741
Target:  5'- uGCUggCCGCGCgcgagcgccgGGcCCAGCucgaGGCCg -3'
miRNA:   3'- -CGAaaGGUGCG----------CCaGGUCGug--CCGGa -5'
5898 5' -58 NC_001806.1 + 76810 0.67 0.751285
Target:  5'- cGCUaa--GCGCGG-CCAGCggcgACGGCCc -3'
miRNA:   3'- -CGAaaggUGCGCCaGGUCG----UGCCGGa -5'
5898 5' -58 NC_001806.1 + 3461 0.68 0.741727
Target:  5'- ----gCCACGCGGccggCCugGGCGCGGCg- -3'
miRNA:   3'- cgaaaGGUGCGCCa---GG--UCGUGCCGga -5'
5898 5' -58 NC_001806.1 + 27270 0.68 0.732076
Target:  5'- aCUggCCAaucgGCGGccgCCAGCGCGGCg- -3'
miRNA:   3'- cGAaaGGUg---CGCCa--GGUCGUGCCGga -5'
5898 5' -58 NC_001806.1 + 89529 0.68 0.732076
Target:  5'- aGCUg-CUGCGCGGcgccCCGGCcgGCGGCCc -3'
miRNA:   3'- -CGAaaGGUGCGCCa---GGUCG--UGCCGGa -5'
5898 5' -58 NC_001806.1 + 50880 0.68 0.72234
Target:  5'- cGCcaagUUCUggGCGGacUCC-GCGCGGCCg -3'
miRNA:   3'- -CGa---AAGGugCGCC--AGGuCGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 24108 0.68 0.721362
Target:  5'- uGCUgUCCACGCGGgacCUGGCcuucgccGgGGCCg -3'
miRNA:   3'- -CGAaAGGUGCGCCa--GGUCG-------UgCCGGa -5'
5898 5' -58 NC_001806.1 + 49430 0.68 0.712529
Target:  5'- --gUUCCcCGCGGUCCuccGCA-GGCCc -3'
miRNA:   3'- cgaAAGGuGCGCCAGGu--CGUgCCGGa -5'
5898 5' -58 NC_001806.1 + 30896 0.68 0.712529
Target:  5'- cGCg--CCACGCGGagacuUCCggGGCcguccccgcggGCGGCCUa -3'
miRNA:   3'- -CGaaaGGUGCGCC-----AGG--UCG-----------UGCCGGA- -5'
5898 5' -58 NC_001806.1 + 4688 0.68 0.712529
Target:  5'- gGCggUCCGUGgGGUCCGGaUACGcGCCg -3'
miRNA:   3'- -CGaaAGGUGCgCCAGGUC-GUGC-CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.