miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 3' -62.2 NC_001806.1 + 30848 0.69 0.50376
Target:  5'- --cCCGCGcugcuucuGGGCCGCGGGggCCGaGGa -3'
miRNA:   3'- ucaGGCGUc-------CUCGGCGCCCaaGGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 22041 0.69 0.50376
Target:  5'- cGUCaGCgGGGAGCCGUGGcccggcgCCGGGc -3'
miRNA:   3'- uCAGgCG-UCCUCGGCGCCcaa----GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 150472 0.69 0.494605
Target:  5'- gGG-CCGCGGGAauuGCCggaaGCGGGaagggcggCCGGGg -3'
miRNA:   3'- -UCaGGCGUCCU---CGG----CGCCCaa------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 105097 0.69 0.494605
Target:  5'- -aUCUGCAGG-GCgGCGGGUcguggCGGGa -3'
miRNA:   3'- ucAGGCGUCCuCGgCGCCCAag---GCCC- -5'
5902 3' -62.2 NC_001806.1 + 23693 0.69 0.489148
Target:  5'- --cCCGCGGGcccuggccucgaucGCCGCGcGGUgcgCCGGGc -3'
miRNA:   3'- ucaGGCGUCCu-------------CGGCGC-CCAa--GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 100384 0.69 0.485526
Target:  5'- cGUCgC-CGGGcGgCGCGGGggCCGGGg -3'
miRNA:   3'- uCAG-GcGUCCuCgGCGCCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 30736 0.69 0.477423
Target:  5'- --cCCGCGGGGGCCGCcucuuccgccgCCGGGg -3'
miRNA:   3'- ucaGGCGUCCUCGGCGcccaa------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 20986 0.69 0.476526
Target:  5'- cGUCgacgGCGGGGGUCGuCGGGgUCCGuGGg -3'
miRNA:   3'- uCAGg---CGUCCUCGGC-GCCCaAGGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 37793 0.69 0.467611
Target:  5'- cGGggCGCGGGGGuCCGCGGG---CGGGg -3'
miRNA:   3'- -UCagGCGUCCUC-GGCGCCCaagGCCC- -5'
5902 3' -62.2 NC_001806.1 + 144581 0.69 0.458782
Target:  5'- cGUCCG--GGuGCCGCGGcucUCCGGGc -3'
miRNA:   3'- uCAGGCguCCuCGGCGCCca-AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 3086 0.69 0.456151
Target:  5'- aGGUCCGCGgcggcggcggccgcGGAGCucggcaggCGCGGGUcCCGcGGc -3'
miRNA:   3'- -UCAGGCGU--------------CCUCG--------GCGCCCAaGGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 148175 0.7 0.450043
Target:  5'- -cUCUGCgugGGGGGgCGCGGGgcgUCCGGcGg -3'
miRNA:   3'- ucAGGCG---UCCUCgGCGCCCa--AGGCC-C- -5'
5902 3' -62.2 NC_001806.1 + 25954 0.7 0.42439
Target:  5'- gGGgCCGCGGGAGCgGgGGGaggagCgGGGg -3'
miRNA:   3'- -UCaGGCGUCCUCGgCgCCCaa---GgCCC- -5'
5902 3' -62.2 NC_001806.1 + 2668 0.7 0.42439
Target:  5'- cGG-CCGCGGGcGCCGCcguguggcuGGGccCCGGGg -3'
miRNA:   3'- -UCaGGCGUCCuCGGCG---------CCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 130452 0.7 0.42439
Target:  5'- -aUCUaCGGGAGCUGCGGug-CCGGGa -3'
miRNA:   3'- ucAGGcGUCCUCGGCGCCcaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 151459 0.7 0.416035
Target:  5'- gGGgcggCCGCGGGcgcgcuccuGaCCGCGGGUUCCGa- -3'
miRNA:   3'- -UCa---GGCGUCCu--------C-GGCGCCCAAGGCcc -5'
5902 3' -62.2 NC_001806.1 + 147740 0.71 0.383646
Target:  5'- cGGcCgCGCGGGGGCgCGCGGGUcCCGa- -3'
miRNA:   3'- -UCaG-GCGUCCUCG-GCGCCCAaGGCcc -5'
5902 3' -62.2 NC_001806.1 + 73050 0.71 0.375814
Target:  5'- --cCCGUcGGGGCCGCGGuccccgccuccGUUCCGGa -3'
miRNA:   3'- ucaGGCGuCCUCGGCGCC-----------CAAGGCCc -5'
5902 3' -62.2 NC_001806.1 + 36660 0.71 0.375814
Target:  5'- cAGUaaGgGGGGGCCacGUGGGUuaugUCCGGGg -3'
miRNA:   3'- -UCAggCgUCCUCGG--CGCCCA----AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 24130 0.71 0.375814
Target:  5'- -cUUCGCcGGGGCCGUGGaGUUuCUGGGg -3'
miRNA:   3'- ucAGGCGuCCUCGGCGCC-CAA-GGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.