miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 3' -62.2 NC_001806.1 + 132651 0.67 0.626737
Target:  5'- uGGUgCGCGGG-GCCGCGGccgcuuacgccgcGcUCCuGGGg -3'
miRNA:   3'- -UCAgGCGUCCuCGGCGCC-------------CaAGG-CCC- -5'
5902 3' -62.2 NC_001806.1 + 65445 0.67 0.617987
Target:  5'- gGGagCGgGGGAuGCCGCGGcccCCGGGu -3'
miRNA:   3'- -UCagGCgUCCU-CGGCGCCcaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 70851 0.67 0.608274
Target:  5'- aAG-CCGCGGcGcGGCCGCGGGacCCGa- -3'
miRNA:   3'- -UCaGGCGUC-C-UCGGCGCCCaaGGCcc -5'
5902 3' -62.2 NC_001806.1 + 10405 0.67 0.607303
Target:  5'- ----gGCGGGAGCCGgGGGgUCCcgcuggcGGGa -3'
miRNA:   3'- ucaggCGUCCUCGGCgCCCaAGG-------CCC- -5'
5902 3' -62.2 NC_001806.1 + 150084 0.67 0.604393
Target:  5'- cGUCC-CAGGGGaggcaggcccaCCGCGGGgcggccccguccCCGGGg -3'
miRNA:   3'- uCAGGcGUCCUC-----------GGCGCCCaa----------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 127593 0.67 0.598577
Target:  5'- cGUCgGgCAGGuGCCGCGGGUguuguaUCUuGGc -3'
miRNA:   3'- uCAGgC-GUCCuCGGCGCCCA------AGGcCC- -5'
5902 3' -62.2 NC_001806.1 + 3954 0.67 0.598577
Target:  5'- cGUCCcCGGGGaCCacgcGCGGGUUCUGGa -3'
miRNA:   3'- uCAGGcGUCCUcGG----CGCCCAAGGCCc -5'
5902 3' -62.2 NC_001806.1 + 25513 0.67 0.598577
Target:  5'- gGGagCGCGGGAcgcGCCGgGGaGggCUGGGg -3'
miRNA:   3'- -UCagGCGUCCU---CGGCgCC-CaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 92912 0.67 0.598577
Target:  5'- uGGUCCGCgcAGG-GCgggGCGGGccuggaggCCGGGg -3'
miRNA:   3'- -UCAGGCG--UCCuCGg--CGCCCaa------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 131819 0.67 0.598577
Target:  5'- --aCCGCGacGGAGCUGCGGGaUuucuacggcUCCGcGGa -3'
miRNA:   3'- ucaGGCGU--CCUCGGCGCCC-A---------AGGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 51030 0.67 0.598577
Target:  5'- gGGUCCGUguuGGGcCCGCGGG-UCCGc- -3'
miRNA:   3'- -UCAGGCGu--CCUcGGCGCCCaAGGCcc -5'
5902 3' -62.2 NC_001806.1 + 33971 0.67 0.579257
Target:  5'- gGGaUCGUGcGGGCCGgGGGUcgCCGGGg -3'
miRNA:   3'- -UCaGGCGUcCUCGGCgCCCAa-GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 37963 0.67 0.579257
Target:  5'- gGGUCCccCAGG-GuuGCGauuGGUUCUGGGg -3'
miRNA:   3'- -UCAGGc-GUCCuCggCGC---CCAAGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 132555 0.67 0.575408
Target:  5'- aGGUCCGgGGGGGacccgucCCGUacuuugccguccugGGGUUuCCGGGu -3'
miRNA:   3'- -UCAGGCgUCCUC-------GGCG--------------CCCAA-GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 84458 0.68 0.569645
Target:  5'- gAGcCUGCuucGGGCCGCGGGgcCCGaGGc -3'
miRNA:   3'- -UCaGGCGuc-CUCGGCGCCCaaGGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 54091 0.68 0.567727
Target:  5'- cAGgCCGCggcgGGGAGCCGagcccgcaugggGGGUgucCCGGGg -3'
miRNA:   3'- -UCaGGCG----UCCUCGGCg-----------CCCAa--GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 27616 0.68 0.563896
Target:  5'- uGGcCCGCGGGucgcucaaugaacCCGCauugguccccugGGGUUCCGGGu -3'
miRNA:   3'- -UCaGGCGUCCuc-----------GGCG------------CCCAAGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 103542 0.68 0.55721
Target:  5'- --cUCGCGGGGGCCGCuuaagcggugguuaGGGUUUgucugacgCGGGg -3'
miRNA:   3'- ucaGGCGUCCUCGGCG--------------CCCAAG--------GCCC- -5'
5902 3' -62.2 NC_001806.1 + 99931 0.68 0.550546
Target:  5'- uGGUCC-CGGGAGaaugGCGGGccgcgcgCCGGGa -3'
miRNA:   3'- -UCAGGcGUCCUCgg--CGCCCaa-----GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 62222 0.68 0.541069
Target:  5'- uGGUCCGUAaGGGCCgucagaGCGGGggagagggCUGGGg -3'
miRNA:   3'- -UCAGGCGUcCUCGG------CGCCCaa------GGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.