miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 3' -62.2 NC_001806.1 + 5105 0.72 0.352975
Target:  5'- --gUCGguGGGGCC-CGGGgagCCGGGg -3'
miRNA:   3'- ucaGGCguCCUCGGcGCCCaa-GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 24873 0.72 0.352975
Target:  5'- cGG-CgGCGGGGGCCGUGGaGgugCUGGGg -3'
miRNA:   3'- -UCaGgCGUCCUCGGCGCC-Caa-GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 7277 0.71 0.360478
Target:  5'- -uUCCcCGGGAGCCcCGGGUUCCGcGa -3'
miRNA:   3'- ucAGGcGUCCUCGGcGCCCAAGGC-Cc -5'
5902 3' -62.2 NC_001806.1 + 29960 0.71 0.36351
Target:  5'- gAG-CCGC-GGcGCCGCGGGgggcgucuggccccUCCGGGg -3'
miRNA:   3'- -UCaGGCGuCCuCGGCGCCCa-------------AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 4823 0.71 0.368091
Target:  5'- gGGUCCgggGCGGcGAgGCCGCGGGgucgggcgUCGGGa -3'
miRNA:   3'- -UCAGG---CGUC-CU-CGGCGCCCaa------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 71801 0.71 0.375814
Target:  5'- cAGUUCGCGcccgaccuGGAGCCGgGGGggUCGGu -3'
miRNA:   3'- -UCAGGCGU--------CCUCGGCgCCCaaGGCCc -5'
5902 3' -62.2 NC_001806.1 + 22559 0.71 0.375814
Target:  5'- cGGcgCUGaCGGGGGCCGCGGGgagccCCGGc -3'
miRNA:   3'- -UCa-GGC-GUCCUCGGCGCCCaa---GGCCc -5'
5902 3' -62.2 NC_001806.1 + 85746 0.71 0.375814
Target:  5'- cGGUCC---GGAGCCGCGcGGccacgucgUCCGGGg -3'
miRNA:   3'- -UCAGGcguCCUCGGCGC-CCa-------AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 73050 0.71 0.375814
Target:  5'- --cCCGUcGGGGCCGCGGuccccgccuccGUUCCGGa -3'
miRNA:   3'- ucaGGCGuCCUCGGCGCC-----------CAAGGCCc -5'
5902 3' -62.2 NC_001806.1 + 36660 0.71 0.375814
Target:  5'- cAGUaaGgGGGGGCCacGUGGGUuaugUCCGGGg -3'
miRNA:   3'- -UCAggCgUCCUCGG--CGCCCA----AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 24130 0.71 0.375814
Target:  5'- -cUUCGCcGGGGCCGUGGaGUUuCUGGGg -3'
miRNA:   3'- ucAGGCGuCCUCGGCGCC-CAA-GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 147740 0.71 0.383646
Target:  5'- cGGcCgCGCGGGGGCgCGCGGGUcCCGa- -3'
miRNA:   3'- -UCaG-GCGUCCUCG-GCGCCCAaGGCcc -5'
5902 3' -62.2 NC_001806.1 + 151459 0.7 0.416035
Target:  5'- gGGgcggCCGCGGGcgcgcuccuGaCCGCGGGUUCCGa- -3'
miRNA:   3'- -UCa---GGCGUCCu--------C-GGCGCCCAAGGCcc -5'
5902 3' -62.2 NC_001806.1 + 130452 0.7 0.42439
Target:  5'- -aUCUaCGGGAGCUGCGGug-CCGGGa -3'
miRNA:   3'- ucAGGcGUCCUCGGCGCCcaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 25954 0.7 0.42439
Target:  5'- gGGgCCGCGGGAGCgGgGGGaggagCgGGGg -3'
miRNA:   3'- -UCaGGCGUCCUCGgCgCCCaa---GgCCC- -5'
5902 3' -62.2 NC_001806.1 + 2668 0.7 0.42439
Target:  5'- cGG-CCGCGGGcGCCGCcguguggcuGGGccCCGGGg -3'
miRNA:   3'- -UCaGGCGUCCuCGGCG---------CCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 148175 0.7 0.450043
Target:  5'- -cUCUGCgugGGGGGgCGCGGGgcgUCCGGcGg -3'
miRNA:   3'- ucAGGCG---UCCUCgGCGCCCa--AGGCC-C- -5'
5902 3' -62.2 NC_001806.1 + 3086 0.69 0.456151
Target:  5'- aGGUCCGCGgcggcggcggccgcGGAGCucggcaggCGCGGGUcCCGcGGc -3'
miRNA:   3'- -UCAGGCGU--------------CCUCG--------GCGCCCAaGGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 144581 0.69 0.458782
Target:  5'- cGUCCG--GGuGCCGCGGcucUCCGGGc -3'
miRNA:   3'- uCAGGCguCCuCGGCGCCca-AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 37793 0.69 0.467611
Target:  5'- cGGggCGCGGGGGuCCGCGGG---CGGGg -3'
miRNA:   3'- -UCagGCGUCCUC-GGCGCCCaagGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.