miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 3' -62.2 NC_001806.1 + 151076 0.79 0.124088
Target:  5'- gGGU-CGCGGGGGUCGCGGGggUCgCGGGg -3'
miRNA:   3'- -UCAgGCGUCCUCGGCGCCCa-AG-GCCC- -5'
5902 3' -62.2 NC_001806.1 + 44158 0.78 0.139992
Target:  5'- cGUUCGUaaacaccAGGAGCgGCGGGUUCCuGGGu -3'
miRNA:   3'- uCAGGCG-------UCCUCGgCGCCCAAGG-CCC- -5'
5902 3' -62.2 NC_001806.1 + 147654 0.78 0.145223
Target:  5'- cGUCCGCGGGGcgggcggccggcuccGCCcCGGGggCCGGGg -3'
miRNA:   3'- uCAGGCGUCCU---------------CGGcGCCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 63166 0.78 0.147365
Target:  5'- uGGaCCGCAGGuugucguuGCCGCGGGUgcaCUGGGg -3'
miRNA:   3'- -UCaGGCGUCCu-------CGGCGCCCAa--GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 151103 0.77 0.16636
Target:  5'- gGGU-CGCGGGGGUCGCGGGgggcUCCGGc -3'
miRNA:   3'- -UCAgGCGUCCUCGGCGCCCa---AGGCCc -5'
5902 3' -62.2 NC_001806.1 + 32978 0.76 0.178787
Target:  5'- gGGUCCGCcGGGGCCcCGGG--CCGGGc -3'
miRNA:   3'- -UCAGGCGuCCUCGGcGCCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 133142 0.76 0.196633
Target:  5'- cGGUCUGCGGGGGCgaUGgGGGUgcguUCUGGGg -3'
miRNA:   3'- -UCAGGCGUCCUCG--GCgCCCA----AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 3326 0.75 0.204679
Target:  5'- gGGcCCGCGGGucccuccGGCCGCGGGgggcuggcgggCCGGGc -3'
miRNA:   3'- -UCaGGCGUCC-------UCGGCGCCCaa---------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 146778 0.75 0.211022
Target:  5'- ---aCGCGGGGGCCGuCGGGUacUCgGGGg -3'
miRNA:   3'- ucagGCGUCCUCGGC-GCCCA--AGgCCC- -5'
5902 3' -62.2 NC_001806.1 + 88628 0.74 0.235923
Target:  5'- uGGUCCGCGGaGAuGCCGCGGaacgacgcgcCCGGGg -3'
miRNA:   3'- -UCAGGCGUC-CU-CGGCGCCcaa-------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 9753 0.74 0.237012
Target:  5'- --aCCGCAGGGcGCCGUGGGUUggGGGc -3'
miRNA:   3'- ucaGGCGUCCU-CGGCGCCCAAggCCC- -5'
5902 3' -62.2 NC_001806.1 + 4363 0.74 0.240857
Target:  5'- cGGcCCGCGGaGGCCGCGGGgguccucgccgccgcCCGGGg -3'
miRNA:   3'- -UCaGGCGUCcUCGGCGCCCaa-------------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 107038 0.74 0.248137
Target:  5'- cGcCCGCGGG-GCCGCGGGcugugCCGcGGa -3'
miRNA:   3'- uCaGGCGUCCuCGGCGCCCaa---GGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 2912 0.74 0.25969
Target:  5'- cGUCUuCGGGGGUCGCGGGccgccgccUCCGGGc -3'
miRNA:   3'- uCAGGcGUCCUCGGCGCCCa-------AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 145629 0.73 0.271679
Target:  5'- gAGgauaCGgAGGAGUgGCGGGUgCCGGGg -3'
miRNA:   3'- -UCag--GCgUCCUCGgCGCCCAaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 147815 0.73 0.271679
Target:  5'- uGGgcgCCGCgGGGGGCCuGUGGGgagaggCCGGGg -3'
miRNA:   3'- -UCa--GGCG-UCCUCGG-CGCCCaa----GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 93890 0.73 0.277838
Target:  5'- gGGcCCGCGGGAgGCCGCcccgaagagGGGgaccCCGGGg -3'
miRNA:   3'- -UCaGGCGUCCU-CGGCG---------CCCaa--GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 64958 0.73 0.29049
Target:  5'- cGUCgGCGcccGGGCCGgGGGUcCCGGGg -3'
miRNA:   3'- uCAGgCGUc--CUCGGCgCCCAaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 20391 0.72 0.338303
Target:  5'- cGUCCgGCGGGcgGGaCCGgGGGgcCCGGGg -3'
miRNA:   3'- uCAGG-CGUCC--UC-GGCgCCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 82731 0.72 0.338303
Target:  5'- gGGUCUGCGGG-GCgGCGGcGUcgUCGGGc -3'
miRNA:   3'- -UCAGGCGUCCuCGgCGCC-CAa-GGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.