miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 3' -62.2 NC_001806.1 + 2668 0.7 0.42439
Target:  5'- cGG-CCGCGGGcGCCGCcguguggcuGGGccCCGGGg -3'
miRNA:   3'- -UCaGGCGUCCuCGGCG---------CCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 2764 0.66 0.666561
Target:  5'- cGGggCGCGGGcgggccugcGCCGCGGcGgcCCGGGg -3'
miRNA:   3'- -UCagGCGUCCu--------CGGCGCC-CaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 2912 0.74 0.25969
Target:  5'- cGUCUuCGGGGGUCGCGGGccgccgccUCCGGGc -3'
miRNA:   3'- uCAGGcGUCCUCGGCGCCCa-------AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 3086 0.69 0.456151
Target:  5'- aGGUCCGCGgcggcggcggccgcGGAGCucggcaggCGCGGGUcCCGcGGc -3'
miRNA:   3'- -UCAGGCGU--------------CCUCG--------GCGCCCAaGGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 3326 0.75 0.204679
Target:  5'- gGGcCCGCGGGucccuccGGCCGCGGGgggcuggcgggCCGGGc -3'
miRNA:   3'- -UCaGGCGUCC-------UCGGCGCCCaa---------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 3954 0.67 0.598577
Target:  5'- cGUCCcCGGGGaCCacgcGCGGGUUCUGGa -3'
miRNA:   3'- uCAGGcGUCCUcGG----CGCCCAAGGCCc -5'
5902 3' -62.2 NC_001806.1 + 4363 0.74 0.240857
Target:  5'- cGGcCCGCGGaGGCCGCGGGgguccucgccgccgcCCGGGg -3'
miRNA:   3'- -UCaGGCGUCcUCGGCGCCCaa-------------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 4449 0.66 0.637435
Target:  5'- cGUCCGCccGGGGGCUGCcGGcgCCGc- -3'
miRNA:   3'- uCAGGCG--UCCUCGGCGcCCaaGGCcc -5'
5902 3' -62.2 NC_001806.1 + 4823 0.71 0.368091
Target:  5'- gGGUCCgggGCGGcGAgGCCGCGGGgucgggcgUCGGGa -3'
miRNA:   3'- -UCAGG---CGUC-CU-CGGCGCCCaa------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 5105 0.72 0.352975
Target:  5'- --gUCGguGGGGCC-CGGGgagCCGGGg -3'
miRNA:   3'- ucaGGCguCCUCGGcGCCCaa-GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 5480 0.67 0.627709
Target:  5'- uAGUCC-CAGGGGCCGgCGGGaa--GGa -3'
miRNA:   3'- -UCAGGcGUCCUCGGC-GCCCaaggCCc -5'
5902 3' -62.2 NC_001806.1 + 7277 0.71 0.360478
Target:  5'- -uUCCcCGGGAGCCcCGGGUUCCGcGa -3'
miRNA:   3'- ucAGGcGUCCUCGGcGCCCAAGGC-Cc -5'
5902 3' -62.2 NC_001806.1 + 9187 0.66 0.685865
Target:  5'- uAG-CC-CGGGGGUCGCGGGUguggCgaGGGc -3'
miRNA:   3'- -UCaGGcGUCCUCGGCGCCCAa---Gg-CCC- -5'
5902 3' -62.2 NC_001806.1 + 9753 0.74 0.237012
Target:  5'- --aCCGCAGGGcGCCGUGGGUUggGGGc -3'
miRNA:   3'- ucaGGCGUCCU-CGGCGCCCAAggCCC- -5'
5902 3' -62.2 NC_001806.1 + 10405 0.67 0.607303
Target:  5'- ----gGCGGGAGCCGgGGGgUCCcgcuggcGGGa -3'
miRNA:   3'- ucaggCGUCCUCGGCgCCCaAGG-------CCC- -5'
5902 3' -62.2 NC_001806.1 + 12912 0.66 0.685865
Target:  5'- gGGUCCuccaAGaGGGCCGaauccucgGGGUcuUCCGGGg -3'
miRNA:   3'- -UCAGGcg--UC-CUCGGCg-------CCCA--AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 20391 0.72 0.338303
Target:  5'- cGUCCgGCGGGcgGGaCCGgGGGgcCCGGGg -3'
miRNA:   3'- uCAGG-CGUCC--UC-GGCgCCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 20986 0.69 0.476526
Target:  5'- cGUCgacgGCGGGGGUCGuCGGGgUCCGuGGg -3'
miRNA:   3'- uCAGg---CGUCCUCGGC-GCCCaAGGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 22041 0.69 0.50376
Target:  5'- cGUCaGCgGGGAGCCGUGGcccggcgCCGGGc -3'
miRNA:   3'- uCAGgCG-UCCUCGGCGCCcaa----GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 22559 0.71 0.375814
Target:  5'- cGGcgCUGaCGGGGGCCGCGGGgagccCCGGc -3'
miRNA:   3'- -UCa-GGC-GUCCUCGGCGCCCaa---GGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.