miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 3' -62.2 NC_001806.1 + 151459 0.7 0.416035
Target:  5'- gGGgcggCCGCGGGcgcgcuccuGaCCGCGGGUUCCGa- -3'
miRNA:   3'- -UCa---GGCGUCCu--------C-GGCGCCCAAGGCcc -5'
5902 3' -62.2 NC_001806.1 + 151289 0.66 0.647157
Target:  5'- gGGgCCGgGGGgcGGCgGCGGuGggCCGGGc -3'
miRNA:   3'- -UCaGGCgUCC--UCGgCGCC-CaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 151103 0.77 0.16636
Target:  5'- gGGU-CGCGGGGGUCGCGGGgggcUCCGGc -3'
miRNA:   3'- -UCAgGCGUCCUCGGCGCCCa---AGGCCc -5'
5902 3' -62.2 NC_001806.1 + 151076 0.79 0.124088
Target:  5'- gGGU-CGCGGGGGUCGCGGGggUCgCGGGg -3'
miRNA:   3'- -UCAgGCGUCCUCGGCGCCCa-AG-GCCC- -5'
5902 3' -62.2 NC_001806.1 + 150872 0.66 0.676229
Target:  5'- cGGcUCCGCGGGccagGGCC-CGGGca-CGGGc -3'
miRNA:   3'- -UC-AGGCGUCC----UCGGcGCCCaagGCCC- -5'
5902 3' -62.2 NC_001806.1 + 150472 0.69 0.494605
Target:  5'- gGG-CCGCGGGAauuGCCggaaGCGGGaagggcggCCGGGg -3'
miRNA:   3'- -UCaGGCGUCCU---CGG----CGCCCaa------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 150084 0.67 0.604393
Target:  5'- cGUCC-CAGGGGaggcaggcccaCCGCGGGgcggccccguccCCGGGg -3'
miRNA:   3'- uCAGGcGUCCUC-----------GGCGCCCaa----------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 148982 0.66 0.643269
Target:  5'- uGUCCgGCAGGucucGGUCGCaGGGaaacacccagacaUCCGGGg -3'
miRNA:   3'- uCAGG-CGUCC----UCGGCG-CCCa------------AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 148175 0.7 0.450043
Target:  5'- -cUCUGCgugGGGGGgCGCGGGgcgUCCGGcGg -3'
miRNA:   3'- ucAGGCG---UCCUCgGCGCCCa--AGGCC-C- -5'
5902 3' -62.2 NC_001806.1 + 147815 0.73 0.271679
Target:  5'- uGGgcgCCGCgGGGGGCCuGUGGGgagaggCCGGGg -3'
miRNA:   3'- -UCa--GGCG-UCCUCGG-CGCCCaa----GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 147740 0.71 0.383646
Target:  5'- cGGcCgCGCGGGGGCgCGCGGGUcCCGa- -3'
miRNA:   3'- -UCaG-GCGUCCUCG-GCGCCCAaGGCcc -5'
5902 3' -62.2 NC_001806.1 + 147654 0.78 0.145223
Target:  5'- cGUCCGCGGGGcgggcggccggcuccGCCcCGGGggCCGGGg -3'
miRNA:   3'- uCAGGCGUCCU---------------CGGcGCCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 146778 0.75 0.211022
Target:  5'- ---aCGCGGGGGCCGuCGGGUacUCgGGGg -3'
miRNA:   3'- ucagGCGUCCUCGGC-GCCCA--AGgCCC- -5'
5902 3' -62.2 NC_001806.1 + 145629 0.73 0.271679
Target:  5'- gAGgauaCGgAGGAGUgGCGGGUgCCGGGg -3'
miRNA:   3'- -UCag--GCgUCCUCGgCGCCCAaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 144581 0.69 0.458782
Target:  5'- cGUCCG--GGuGCCGCGGcucUCCGGGc -3'
miRNA:   3'- uCAGGCguCCuCGGCGCCca-AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 138835 0.67 0.627709
Target:  5'- ----aGCAacuGGGGCCGCGGGa--CGGGg -3'
miRNA:   3'- ucaggCGU---CCUCGGCGCCCaagGCCC- -5'
5902 3' -62.2 NC_001806.1 + 133250 0.66 0.637435
Target:  5'- cGG-CCGUGGGAGCCGUgcuuaGGGccaacgccgUCCGGc -3'
miRNA:   3'- -UCaGGCGUCCUCGGCG-----CCCa--------AGGCCc -5'
5902 3' -62.2 NC_001806.1 + 133142 0.76 0.196633
Target:  5'- cGGUCUGCGGGGGCgaUGgGGGUgcguUCUGGGg -3'
miRNA:   3'- -UCAGGCGUCCUCG--GCgCCCA----AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 132651 0.67 0.626737
Target:  5'- uGGUgCGCGGG-GCCGCGGccgcuuacgccgcGcUCCuGGGg -3'
miRNA:   3'- -UCAgGCGUCCuCGGCGCC-------------CaAGG-CCC- -5'
5902 3' -62.2 NC_001806.1 + 132555 0.67 0.575408
Target:  5'- aGGUCCGgGGGGGacccgucCCGUacuuugccguccugGGGUUuCCGGGu -3'
miRNA:   3'- -UCAGGCgUCCUC-------GGCG--------------CCCAA-GGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.