miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 3' -62.2 NC_001806.1 + 23693 0.69 0.489148
Target:  5'- --cCCGCGGGcccuggccucgaucGCCGCGcGGUgcgCCGGGc -3'
miRNA:   3'- ucaGGCGUCCu-------------CGGCGC-CCAa--GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 24130 0.71 0.375814
Target:  5'- -cUUCGCcGGGGCCGUGGaGUUuCUGGGg -3'
miRNA:   3'- ucAGGCGuCCUCGGCGCC-CAA-GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 24873 0.72 0.352975
Target:  5'- cGG-CgGCGGGGGCCGUGGaGgugCUGGGg -3'
miRNA:   3'- -UCaGgCGUCCUCGGCGCC-Caa-GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 25513 0.67 0.598577
Target:  5'- gGGagCGCGGGAcgcGCCGgGGaGggCUGGGg -3'
miRNA:   3'- -UCagGCGUCCU---CGGCgCC-CaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 25954 0.7 0.42439
Target:  5'- gGGgCCGCGGGAGCgGgGGGaggagCgGGGg -3'
miRNA:   3'- -UCaGGCGUCCUCGgCgCCCaa---GgCCC- -5'
5902 3' -62.2 NC_001806.1 + 27616 0.68 0.563896
Target:  5'- uGGcCCGCGGGucgcucaaugaacCCGCauugguccccugGGGUUCCGGGu -3'
miRNA:   3'- -UCaGGCGUCCuc-----------GGCG------------CCCAAGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 29960 0.71 0.36351
Target:  5'- gAG-CCGC-GGcGCCGCGGGgggcgucuggccccUCCGGGg -3'
miRNA:   3'- -UCaGGCGuCCuCGGCGCCCa-------------AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 30637 0.66 0.656868
Target:  5'- gGG-CCGgGGGGGCgCGgccaGGGUgggcCCGGGa -3'
miRNA:   3'- -UCaGGCgUCCUCG-GCg---CCCAa---GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 30736 0.69 0.477423
Target:  5'- --cCCGCGGGGGCCGCcucuuccgccgCCGGGg -3'
miRNA:   3'- ucaGGCGUCCUCGGCGcccaa------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 30848 0.69 0.50376
Target:  5'- --cCCGCGcugcuucuGGGCCGCGGGggCCGaGGa -3'
miRNA:   3'- ucaGGCGUc-------CUCGGCGCCCaaGGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 31302 0.66 0.656868
Target:  5'- uGGUCCG-GGGAGCaGgGGGcgucgacCCGGGa -3'
miRNA:   3'- -UCAGGCgUCCUCGgCgCCCaa-----GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 32945 0.67 0.627709
Target:  5'- gGG-CCGUuguGGGGCCcCGGG--CCGGGg -3'
miRNA:   3'- -UCaGGCGu--CCUCGGcGCCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 32978 0.76 0.178787
Target:  5'- gGGUCCGCcGGGGCCcCGGG--CCGGGc -3'
miRNA:   3'- -UCAGGCGuCCUCGGcGCCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 33971 0.67 0.579257
Target:  5'- gGGaUCGUGcGGGCCGgGGGUcgCCGGGg -3'
miRNA:   3'- -UCaGGCGUcCUCGGCgCCCAa-GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 35272 0.66 0.666561
Target:  5'- ---gCGCGGGAGUCGUGGcUUUgGGGc -3'
miRNA:   3'- ucagGCGUCCUCGGCGCCcAAGgCCC- -5'
5902 3' -62.2 NC_001806.1 + 36660 0.71 0.375814
Target:  5'- cAGUaaGgGGGGGCCacGUGGGUuaugUCCGGGg -3'
miRNA:   3'- -UCAggCgUCCUCGG--CGCCCA----AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 37793 0.69 0.467611
Target:  5'- cGGggCGCGGGGGuCCGCGGG---CGGGg -3'
miRNA:   3'- -UCagGCGUCCUC-GGCGCCCaagGCCC- -5'
5902 3' -62.2 NC_001806.1 + 37963 0.67 0.579257
Target:  5'- gGGUCCccCAGG-GuuGCGauuGGUUCUGGGg -3'
miRNA:   3'- -UCAGGc-GUCCuCggCGC---CCAAGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 44158 0.78 0.139992
Target:  5'- cGUUCGUaaacaccAGGAGCgGCGGGUUCCuGGGu -3'
miRNA:   3'- uCAGGCG-------UCCUCGgCGCCCAAGG-CCC- -5'
5902 3' -62.2 NC_001806.1 + 45282 0.66 0.647157
Target:  5'- uAG-CgGCGGGAGaCGCGGGcccgCgCGGGg -3'
miRNA:   3'- -UCaGgCGUCCUCgGCGCCCaa--G-GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.