miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 5' -52.9 NC_001806.1 + 70711 0.66 0.968475
Target:  5'- gCGCGAAAuuCACg--GGUUUCUGUCCg -3'
miRNA:   3'- -GUGCUUUuuGUGguaCCGAGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 89525 0.66 0.968475
Target:  5'- gGCGAGcuGCugCGcGGCgcCCCGgCCg -3'
miRNA:   3'- gUGCUUuuUGugGUaCCGa-GGGCgGG- -5'
5902 5' -52.9 NC_001806.1 + 120797 0.66 0.968475
Target:  5'- -------cGCGCCGuUGGCcCCCGCCUc -3'
miRNA:   3'- gugcuuuuUGUGGU-ACCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 144817 0.66 0.968475
Target:  5'- gACGAGGGGCccccgACCGcGGCgguccgggcCCCGUCCg -3'
miRNA:   3'- gUGCUUUUUG-----UGGUaCCGa--------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 20016 0.66 0.968475
Target:  5'- uCGCGAugccGACGCCGUccGCUCCgacgGCCCu -3'
miRNA:   3'- -GUGCUuu--UUGUGGUAc-CGAGGg---CGGG- -5'
5902 5' -52.9 NC_001806.1 + 29956 0.66 0.968475
Target:  5'- uCGCGAGccgcGGCGCCGcggggGGCgUCUgGCCCc -3'
miRNA:   3'- -GUGCUUu---UUGUGGUa----CCG-AGGgCGGG- -5'
5902 5' -52.9 NC_001806.1 + 6040 0.66 0.968475
Target:  5'- uGCGAGcacuGGCGCCGUGcccgaCUCCgCGCCg -3'
miRNA:   3'- gUGCUUu---UUGUGGUACc----GAGG-GCGGg -5'
5902 5' -52.9 NC_001806.1 + 79958 0.67 0.965606
Target:  5'- gGCGAAAAcCGCCGccccccgcuaaccucGGgUCCCGCgCCa -3'
miRNA:   3'- gUGCUUUUuGUGGUa--------------CCgAGGGCG-GG- -5'
5902 5' -52.9 NC_001806.1 + 122104 0.67 0.965277
Target:  5'- gCugGAGgcAAACACgAUGGUacugcgcgaCCCGUCCg -3'
miRNA:   3'- -GugCUU--UUUGUGgUACCGa--------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 20349 0.67 0.965277
Target:  5'- gGCGGGcgGC-CCuugGGCcgCCCGCCg -3'
miRNA:   3'- gUGCUUuuUGuGGua-CCGa-GGGCGGg -5'
5902 5' -52.9 NC_001806.1 + 109350 0.67 0.965277
Target:  5'- gCACGAAcucgcugacGGugGCCcgcuUGGCgCCCGCgCCc -3'
miRNA:   3'- -GUGCUU---------UUugUGGu---ACCGaGGGCG-GG- -5'
5902 5' -52.9 NC_001806.1 + 97616 0.67 0.965277
Target:  5'- gACGcccgcGACGCCAUGGaccgcaUCuUCGCCCg -3'
miRNA:   3'- gUGCuuu--UUGUGGUACCg-----AG-GGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 94340 0.67 0.965277
Target:  5'- uCACGGAG---ACCAUgGGCcuggCCCGaCCCu -3'
miRNA:   3'- -GUGCUUUuugUGGUA-CCGa---GGGC-GGG- -5'
5902 5' -52.9 NC_001806.1 + 43172 0.67 0.965277
Target:  5'- uGCGuccgcGCGCCcaagGGCcaguaCCCGCCCg -3'
miRNA:   3'- gUGCuuuu-UGUGGua--CCGa----GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 65637 0.67 0.961857
Target:  5'- gGCGAGAGGgGCCccGGCggCCUcCCCc -3'
miRNA:   3'- gUGCUUUUUgUGGuaCCGa-GGGcGGG- -5'
5902 5' -52.9 NC_001806.1 + 119612 0.67 0.961857
Target:  5'- gGCGggGGcCGCUuuGUGGC-CCCagcGCCCc -3'
miRNA:   3'- gUGCuuUUuGUGG--UACCGaGGG---CGGG- -5'
5902 5' -52.9 NC_001806.1 + 22451 0.67 0.961857
Target:  5'- aCGCGGcgGcCGCCGUGGCcaugagCCGCCg -3'
miRNA:   3'- -GUGCUuuUuGUGGUACCGag----GGCGGg -5'
5902 5' -52.9 NC_001806.1 + 56796 0.67 0.961857
Target:  5'- cCugGAAAAGCAguCCcUGGCgguggucgCCCccggGCCCg -3'
miRNA:   3'- -GugCUUUUUGU--GGuACCGa-------GGG----CGGG- -5'
5902 5' -52.9 NC_001806.1 + 106872 0.67 0.961857
Target:  5'- aCGCGG---GCGCCGagcagGGC-CCgCGCCCc -3'
miRNA:   3'- -GUGCUuuuUGUGGUa----CCGaGG-GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 29792 0.67 0.961857
Target:  5'- cCACGcAGAGGCGCCGccGCgCCC-CCCg -3'
miRNA:   3'- -GUGC-UUUUUGUGGUacCGaGGGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.