miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 5' -52.9 NC_001806.1 + 75925 0.66 0.974232
Target:  5'- -cCGAGAAccaGCGCCAccccauGCUCCC-CCCg -3'
miRNA:   3'- guGCUUUU---UGUGGUac----CGAGGGcGGG- -5'
5902 5' -52.9 NC_001806.1 + 29529 0.66 0.974232
Target:  5'- cCugGggGGGCACaCGgugagGGC-CCuguCGCCCa -3'
miRNA:   3'- -GugCuuUUUGUG-GUa----CCGaGG---GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 28113 0.66 0.974232
Target:  5'- aUACGAc---CcCCAUGGagcCCCGCCCc -3'
miRNA:   3'- -GUGCUuuuuGuGGUACCga-GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 146798 0.66 0.974232
Target:  5'- -uCGggGGGCAUCAcgUGGUUaCCCGCg- -3'
miRNA:   3'- guGCuuUUUGUGGU--ACCGA-GGGCGgg -5'
5902 5' -52.9 NC_001806.1 + 22670 0.66 0.974232
Target:  5'- cCGCGggGAuccuCGCCGcccuggGGCggcuguccgCCgCGCCCg -3'
miRNA:   3'- -GUGCuuUUu---GUGGUa-----CCGa--------GG-GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 29922 0.66 0.974232
Target:  5'- cCACcAAcAGCAgCGgcggggcGGCUCCCGCCa -3'
miRNA:   3'- -GUGcUUuUUGUgGUa------CCGAGGGCGGg -5'
5902 5' -52.9 NC_001806.1 + 61364 0.66 0.974232
Target:  5'- gGCGGAAAACA--GUGGCUUCauguggauaagGCCCa -3'
miRNA:   3'- gUGCUUUUUGUggUACCGAGGg----------CGGG- -5'
5902 5' -52.9 NC_001806.1 + 77260 0.66 0.974232
Target:  5'- gGCGGAAuucGACGCgGUGGCcggggaCCUgGCCCc -3'
miRNA:   3'- gUGCUUU---UUGUGgUACCGa-----GGG-CGGG- -5'
5902 5' -52.9 NC_001806.1 + 79542 0.66 0.974232
Target:  5'- aCGCGGccGGCGCCcgugGGCcCCCGCg- -3'
miRNA:   3'- -GUGCUuuUUGUGGua--CCGaGGGCGgg -5'
5902 5' -52.9 NC_001806.1 + 128043 0.66 0.974232
Target:  5'- gACGAu--GC-CCGUGGCggCCacgGCCCc -3'
miRNA:   3'- gUGCUuuuUGuGGUACCGa-GGg--CGGG- -5'
5902 5' -52.9 NC_001806.1 + 47173 0.66 0.971457
Target:  5'- aCGCGGAcgGCgcuucGCCAccGCcccCCCGCCCg -3'
miRNA:   3'- -GUGCUUuuUG-----UGGUacCGa--GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 78549 0.66 0.971457
Target:  5'- gCGCGAGGcguCACCccccGCUCCC-CCCa -3'
miRNA:   3'- -GUGCUUUuu-GUGGuac-CGAGGGcGGG- -5'
5902 5' -52.9 NC_001806.1 + 79732 0.66 0.971457
Target:  5'- cCGCGAc---CACCcaggguUGGCggccgCCUGCCCu -3'
miRNA:   3'- -GUGCUuuuuGUGGu-----ACCGa----GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 125493 0.66 0.971457
Target:  5'- gACGAAAAGC-CCcgGGCcgCgUCGCCg -3'
miRNA:   3'- gUGCUUUUUGuGGuaCCGa-G-GGCGGg -5'
5902 5' -52.9 NC_001806.1 + 30149 0.66 0.971457
Target:  5'- cCGCGGcgcccAUGCCA-GGCUccgcccCCCGCCCc -3'
miRNA:   3'- -GUGCUuuu--UGUGGUaCCGA------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 88643 0.66 0.971457
Target:  5'- cCGCGGAAcgacGCGCCcgGGgaCUCGCgCa -3'
miRNA:   3'- -GUGCUUUu---UGUGGuaCCgaGGGCGgG- -5'
5902 5' -52.9 NC_001806.1 + 20016 0.66 0.968475
Target:  5'- uCGCGAugccGACGCCGUccGCUCCgacgGCCCu -3'
miRNA:   3'- -GUGCUuu--UUGUGGUAc-CGAGGg---CGGG- -5'
5902 5' -52.9 NC_001806.1 + 144817 0.66 0.968475
Target:  5'- gACGAGGGGCccccgACCGcGGCgguccgggcCCCGUCCg -3'
miRNA:   3'- gUGCUUUUUG-----UGGUaCCGa--------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 120797 0.66 0.968475
Target:  5'- -------cGCGCCGuUGGCcCCCGCCUc -3'
miRNA:   3'- gugcuuuuUGUGGU-ACCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 89525 0.66 0.968475
Target:  5'- gGCGAGcuGCugCGcGGCgcCCCGgCCg -3'
miRNA:   3'- gUGCUUuuUGugGUaCCGa-GGGCgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.