miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 5' -52.9 NC_001806.1 + 150686 0.72 0.762034
Target:  5'- gGCGGc---CGCCgAUGGCcagUCCCGCCCc -3'
miRNA:   3'- gUGCUuuuuGUGG-UACCG---AGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 20465 0.72 0.771657
Target:  5'- cCGgGAAGucGGgGCCcgGGC-CCCGCCCc -3'
miRNA:   3'- -GUgCUUU--UUgUGGuaCCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 7569 0.72 0.771657
Target:  5'- -uCGGGAuccACACCGcGGUucgcgUCCCGCCCa -3'
miRNA:   3'- guGCUUUu--UGUGGUaCCG-----AGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 21119 0.72 0.780208
Target:  5'- -uCGGAGAacaagcaGCGCCccGGCUCCCcggGCCCc -3'
miRNA:   3'- guGCUUUU-------UGUGGuaCCGAGGG---CGGG- -5'
5902 5' -52.9 NC_001806.1 + 116935 0.72 0.781151
Target:  5'- aCGCGGgccaacuagGAGACACCuuggcccUGGCUCCCGUg- -3'
miRNA:   3'- -GUGCU---------UUUUGUGGu------ACCGAGGGCGgg -5'
5902 5' -52.9 NC_001806.1 + 125699 0.72 0.781151
Target:  5'- gCGCGGGuuGCugCGcGGCgUCCgCGCCCc -3'
miRNA:   3'- -GUGCUUuuUGugGUaCCG-AGG-GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 135763 0.72 0.790506
Target:  5'- uGCGGAAGGCcuggcgaaGCUgcGGCgCCCGCCCc -3'
miRNA:   3'- gUGCUUUUUG--------UGGuaCCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 130739 0.72 0.790506
Target:  5'- -cCGGAGAGCuggaGCuCGUGGC-CCUGCCCc -3'
miRNA:   3'- guGCUUUUUG----UG-GUACCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 132060 0.72 0.790506
Target:  5'- -uUGAGAGAgCGUCGUGGggCCCGCCCg -3'
miRNA:   3'- guGCUUUUU-GUGGUACCgaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 108279 0.72 0.790506
Target:  5'- aCGCGAauaAAGugGgCGUGGCUucggccguuucUCCGCCCg -3'
miRNA:   3'- -GUGCU---UUUugUgGUACCGA-----------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 48936 0.72 0.803352
Target:  5'- uCGCGGGAGauacugcguuuuuuuGCGCCGgccccgucGCUCCCGUCCa -3'
miRNA:   3'- -GUGCUUUU---------------UGUGGUac------CGAGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 22765 0.71 0.808763
Target:  5'- gACGAc-GACGCCG-GGCgCCgCGCCCa -3'
miRNA:   3'- gUGCUuuUUGUGGUaCCGaGG-GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 96338 0.71 0.808763
Target:  5'- gACGggGGGCACgAcgGGCccccguagUCCCGCCa -3'
miRNA:   3'- gUGCuuUUUGUGgUa-CCG--------AGGGCGGg -5'
5902 5' -52.9 NC_001806.1 + 144877 0.71 0.812337
Target:  5'- aCGCGAAAAAgGCcccccggaggcuuuuCcgGGUUCCCgGCCCg -3'
miRNA:   3'- -GUGCUUUUUgUG---------------GuaCCGAGGG-CGGG- -5'
5902 5' -52.9 NC_001806.1 + 130790 0.71 0.812337
Target:  5'- uCugGGAGcuguugugccugugcAGCACCAUGGCcgCgCGCCUg -3'
miRNA:   3'- -GugCUUU---------------UUGUGGUACCGa-GgGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 148123 0.71 0.817646
Target:  5'- gGCuGggGGGCugCGUGagacGC-CCCGCCCg -3'
miRNA:   3'- gUG-CuuUUUGugGUAC----CGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 5510 0.71 0.817646
Target:  5'- aGCGGAGGcCGCC--GGCccCCCGCCCc -3'
miRNA:   3'- gUGCUUUUuGUGGuaCCGa-GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 26793 0.71 0.817646
Target:  5'- cCGCGGA--GCACC-UGGCgcgCCUGCgCCu -3'
miRNA:   3'- -GUGCUUuuUGUGGuACCGa--GGGCG-GG- -5'
5902 5' -52.9 NC_001806.1 + 55247 0.71 0.817646
Target:  5'- aACGGAGggucGGCGCCcgGGCcggcccccUCCGCCCa -3'
miRNA:   3'- gUGCUUU----UUGUGGuaCCGa-------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 49456 0.71 0.817646
Target:  5'- gCAgGggGGAUACC-UGGgUCCCGUCg -3'
miRNA:   3'- -GUgCuuUUUGUGGuACCgAGGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.