miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 5' -52.9 NC_001806.1 + 20465 0.72 0.771657
Target:  5'- cCGgGAAGucGGgGCCcgGGC-CCCGCCCc -3'
miRNA:   3'- -GUgCUUU--UUgUGGuaCCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 20544 0.67 0.959697
Target:  5'- gGCGGuaauGAGAUGCCAUgcggGGCggggcgcggacccaCCCGCCCu -3'
miRNA:   3'- gUGCU----UUUUGUGGUA----CCGa-------------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 20993 0.7 0.866229
Target:  5'- gGCGggGgucgucgGGguCCGUGGgUCUCGCCCc -3'
miRNA:   3'- gUGCuuU-------UUguGGUACCgAGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 21119 0.72 0.780208
Target:  5'- -uCGGAGAacaagcaGCGCCccGGCUCCCcggGCCCc -3'
miRNA:   3'- guGCUUUU-------UGUGGuaCCGAGGG---CGGG- -5'
5902 5' -52.9 NC_001806.1 + 21774 0.66 0.979184
Target:  5'- gGCGggGuccgucgagcgcGGCGCCGgcagcccccgGGCggacgccgccCCCGCCCg -3'
miRNA:   3'- gUGCuuU------------UUGUGGUa---------CCGa---------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 22045 0.77 0.52667
Target:  5'- aGCGggGAgccguggcccgGCGCCG-GGCcCCCGCCCc -3'
miRNA:   3'- gUGCuuUU-----------UGUGGUaCCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 22404 0.71 0.826354
Target:  5'- cCugGGcu-ACGCCAUGGCggCCgGCCg -3'
miRNA:   3'- -GugCUuuuUGUGGUACCGa-GGgCGGg -5'
5902 5' -52.9 NC_001806.1 + 22451 0.67 0.961857
Target:  5'- aCGCGGcgGcCGCCGUGGCcaugagCCGCCg -3'
miRNA:   3'- -GUGCUuuUuGUGGUACCGag----GGCGGg -5'
5902 5' -52.9 NC_001806.1 + 22670 0.66 0.974232
Target:  5'- cCGCGggGAuccuCGCCGcccuggGGCggcuguccgCCgCGCCCg -3'
miRNA:   3'- -GUGCuuUUu---GUGGUa-----CCGa--------GG-GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 22765 0.71 0.808763
Target:  5'- gACGAc-GACGCCG-GGCgCCgCGCCCa -3'
miRNA:   3'- gUGCUuuUUGUGGUaCCGaGG-GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 23064 0.66 0.976805
Target:  5'- aGCGAGGc-CGCCGUGGC-CgCCGUgCg -3'
miRNA:   3'- gUGCUUUuuGUGGUACCGaG-GGCGgG- -5'
5902 5' -52.9 NC_001806.1 + 23351 0.7 0.874487
Target:  5'- gACGAAGAagagcggcgcggACGCCcccGGCUCggaCGCCCg -3'
miRNA:   3'- gUGCUUUU------------UGUGGua-CCGAGg--GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 23458 0.7 0.851347
Target:  5'- cCGCGGcgccccGGGcCGCCGcGGCgcaggCCCGCCCg -3'
miRNA:   3'- -GUGCU------UUUuGUGGUaCCGa----GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 23578 0.67 0.958211
Target:  5'- aCACGGc-GGCGCCcgcGGC-CgCCGCCCu -3'
miRNA:   3'- -GUGCUuuUUGUGGua-CCGaG-GGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 23718 0.68 0.945864
Target:  5'- gCGCGGu--GCGCCG-GGCccgccCCCGCCg -3'
miRNA:   3'- -GUGCUuuuUGUGGUaCCGa----GGGCGGg -5'
5902 5' -52.9 NC_001806.1 + 24551 0.68 0.92041
Target:  5'- -uCGggGAccaccgACGCCAUGGCgCCCGgCg -3'
miRNA:   3'- guGCuuUU------UGUGGUACCGaGGGCgGg -5'
5902 5' -52.9 NC_001806.1 + 26640 0.66 0.968475
Target:  5'- -cCGAGccGGCGCCAgaGGC-CCgGCCCa -3'
miRNA:   3'- guGCUUu-UUGUGGUa-CCGaGGgCGGG- -5'
5902 5' -52.9 NC_001806.1 + 26793 0.71 0.817646
Target:  5'- cCGCGGA--GCACC-UGGCgcgCCUGCgCCu -3'
miRNA:   3'- -GUGCUUuuUGUGGuACCGa--GGGCG-GG- -5'
5902 5' -52.9 NC_001806.1 + 28113 0.66 0.974232
Target:  5'- aUACGAc---CcCCAUGGagcCCCGCCCc -3'
miRNA:   3'- -GUGCUuuuuGuGGUACCga-GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 28697 0.7 0.851347
Target:  5'- -uUGggGGACGCCGUGGgaCCC-CCg -3'
miRNA:   3'- guGCuuUUUGUGGUACCgaGGGcGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.