miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 5' -52.9 NC_001806.1 + 1682 0.73 0.742439
Target:  5'- gCGCGccGGGCGCCAUGGCgucgguggUCCCcgaggccgccGCCCg -3'
miRNA:   3'- -GUGCuuUUUGUGGUACCG--------AGGG----------CGGG- -5'
5902 5' -52.9 NC_001806.1 + 1922 0.69 0.908496
Target:  5'- -cCGAGGccAGCACCGUgcGGCgcaggUCCCGCgCCg -3'
miRNA:   3'- guGCUUU--UUGUGGUA--CCG-----AGGGCG-GG- -5'
5902 5' -52.9 NC_001806.1 + 2185 0.68 0.941267
Target:  5'- aCACGucgGGGGCGCC--GGUccaauugCCCGCCCa -3'
miRNA:   3'- -GUGCu--UUUUGUGGuaCCGa------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 3346 0.68 0.936424
Target:  5'- cCGCGggGGGCuggcggGCCG-GGC-CCCGgCCa -3'
miRNA:   3'- -GUGCuuUUUG------UGGUaCCGaGGGCgGG- -5'
5902 5' -52.9 NC_001806.1 + 3580 0.67 0.953529
Target:  5'- gGCGAGGAuccccgcgGCGCCGUacccGGCgggcaccgcgcgCUCGCCCg -3'
miRNA:   3'- gUGCUUUU--------UGUGGUA----CCGa-----------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 3667 0.73 0.702125
Target:  5'- uGCGcc-GGCGCCggGGCUCCCcgcgGCCCc -3'
miRNA:   3'- gUGCuuuUUGUGGuaCCGAGGG----CGGG- -5'
5902 5' -52.9 NC_001806.1 + 3834 0.68 0.931334
Target:  5'- aGCGGccGGcCGCCAUGGCguagCCCagguggggcacgGCCCg -3'
miRNA:   3'- gUGCUuuUU-GUGGUACCGa---GGG------------CGGG- -5'
5902 5' -52.9 NC_001806.1 + 4186 0.69 0.902171
Target:  5'- gGCGggGgcccGGCGCCGggccacGGCUCcCCGCUg -3'
miRNA:   3'- gUGCuuU----UUGUGGUa-----CCGAG-GGCGGg -5'
5902 5' -52.9 NC_001806.1 + 4423 0.7 0.874487
Target:  5'- aGgGggGGugGCCcgGGCgggggcggcgUCCGCCCg -3'
miRNA:   3'- gUgCuuUUugUGGuaCCGa---------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 5510 0.71 0.817646
Target:  5'- aGCGGAGGcCGCC--GGCccCCCGCCCc -3'
miRNA:   3'- gUGCUUUUuGUGGuaCCGa-GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 5620 0.7 0.859276
Target:  5'- gUugGucGAAC-CCccGGC-CCCGCCCa -3'
miRNA:   3'- -GugCuuUUUGuGGuaCCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 5757 0.67 0.953124
Target:  5'- aACGAGGAACgggcagggggcgggGCCcgGGC-CCCGacuuCCCg -3'
miRNA:   3'- gUGCUUUUUG--------------UGGuaCCGaGGGC----GGG- -5'
5902 5' -52.9 NC_001806.1 + 5892 0.69 0.914576
Target:  5'- gGCGGGcgGC-CCAagGGCcgCCCGCCUu -3'
miRNA:   3'- gUGCUUuuUGuGGUa-CCGa-GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 6040 0.66 0.968475
Target:  5'- uGCGAGcacuGGCGCCGUGcccgaCUCCgCGCCg -3'
miRNA:   3'- gUGCUUu---UUGUGGUACc----GAGG-GCGGg -5'
5902 5' -52.9 NC_001806.1 + 7569 0.72 0.771657
Target:  5'- -uCGGGAuccACACCGcGGUucgcgUCCCGCCCa -3'
miRNA:   3'- guGCUUUu--UGUGGUaCCG-----AGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 7826 0.68 0.925996
Target:  5'- gCGCGGcuGguccACACCcaGUGGCUCCgGgCCa -3'
miRNA:   3'- -GUGCUuuU----UGUGG--UACCGAGGgCgGG- -5'
5902 5' -52.9 NC_001806.1 + 19612 0.74 0.66083
Target:  5'- -cCGGAGGAcCACaGUGGCUucccCCCGCCCg -3'
miRNA:   3'- guGCUUUUU-GUGgUACCGA----GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 20016 0.66 0.968475
Target:  5'- uCGCGAugccGACGCCGUccGCUCCgacgGCCCu -3'
miRNA:   3'- -GUGCUuu--UUGUGGUAc-CGAGGg---CGGG- -5'
5902 5' -52.9 NC_001806.1 + 20294 0.67 0.958211
Target:  5'- gGCGGccc-CGCCcccuuggGGCggUCCCGCCCg -3'
miRNA:   3'- gUGCUuuuuGUGGua-----CCG--AGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 20349 0.67 0.965277
Target:  5'- gGCGGGcgGC-CCuugGGCcgCCCGCCg -3'
miRNA:   3'- gUGCUUuuUGuGGua-CCGa-GGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.