miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 5' -52.9 NC_001806.1 + 40160 0.8 0.361753
Target:  5'- gACGAAuguccGCGCCGUGGCgcgaCUCGCCCg -3'
miRNA:   3'- gUGCUUuu---UGUGGUACCGa---GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 58785 0.78 0.449097
Target:  5'- cCACGAGAGACaggaacgccGCCGUGGgUCCgCGCCa -3'
miRNA:   3'- -GUGCUUUUUG---------UGGUACCgAGG-GCGGg -5'
5902 5' -52.9 NC_001806.1 + 132782 0.77 0.506749
Target:  5'- uGCGGGAGgcggugGCGCgGUGGCaUCCCGCCa -3'
miRNA:   3'- gUGCUUUU------UGUGgUACCG-AGGGCGGg -5'
5902 5' -52.9 NC_001806.1 + 53389 0.77 0.52667
Target:  5'- aCGCGAAGGACGCCGgagccGGUgaacgccUCCGCCCg -3'
miRNA:   3'- -GUGCUUUUUGUGGUa----CCGa------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 113425 0.77 0.52667
Target:  5'- gACGcc--ACGCCAUGGCcCCCGCCa -3'
miRNA:   3'- gUGCuuuuUGUGGUACCGaGGGCGGg -5'
5902 5' -52.9 NC_001806.1 + 22045 0.77 0.52667
Target:  5'- aGCGggGAgccguggcccgGCGCCG-GGCcCCCGCCCc -3'
miRNA:   3'- gUGCuuUU-----------UGUGGUaCCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 125845 0.76 0.533713
Target:  5'- cCGCGGGcccccggccgccgcGGACGCCGUGGCgccCCgGCCCc -3'
miRNA:   3'- -GUGCUU--------------UUUGUGGUACCGa--GGgCGGG- -5'
5902 5' -52.9 NC_001806.1 + 57591 0.75 0.608732
Target:  5'- uGCGAGAGuugggcggcCGCCAaGGC-CCCGCCCc -3'
miRNA:   3'- gUGCUUUUu--------GUGGUaCCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 90883 0.74 0.66083
Target:  5'- aACGu-GGACGCCGUGGCccgcgcggCCGCCCa -3'
miRNA:   3'- gUGCuuUUUGUGGUACCGag------GGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 19612 0.74 0.66083
Target:  5'- -cCGGAGGAcCACaGUGGCUucccCCCGCCCg -3'
miRNA:   3'- guGCUUUUU-GUGgUACCGA----GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 68094 0.74 0.66083
Target:  5'- aCGCGAGccGGGCGUCAUGGCagaccgcggucUCCCGUCCg -3'
miRNA:   3'- -GUGCUU--UUUGUGGUACCG-----------AGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 57711 0.74 0.66083
Target:  5'- uCGCGAAAguAACACgCGUaacGGCUUCCGCuCCg -3'
miRNA:   3'- -GUGCUUU--UUGUG-GUA---CCGAGGGCG-GG- -5'
5902 5' -52.9 NC_001806.1 + 3667 0.73 0.702125
Target:  5'- uGCGcc-GGCGCCggGGCUCCCcgcgGCCCc -3'
miRNA:   3'- gUGCuuuUUGUGGuaCCGAGGG----CGGG- -5'
5902 5' -52.9 NC_001806.1 + 53258 0.73 0.71232
Target:  5'- -cCGGGccGCACCG-GGCcCCCGCCCc -3'
miRNA:   3'- guGCUUuuUGUGGUaCCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 103483 0.73 0.716378
Target:  5'- --gGGAAAAC-CCgggggcuguugucggGUGGCUCCCGCCg -3'
miRNA:   3'- gugCUUUUUGuGG---------------UACCGAGGGCGGg -5'
5902 5' -52.9 NC_001806.1 + 108840 0.73 0.722443
Target:  5'- aCAUGAGGAGCugcucgGCUGUGGUUCCgGCCg -3'
miRNA:   3'- -GUGCUUUUUG------UGGUACCGAGGgCGGg -5'
5902 5' -52.9 NC_001806.1 + 115074 0.73 0.732486
Target:  5'- gGCGGGAAAcCGCCuggGGCcggCCCaGCCCg -3'
miRNA:   3'- gUGCUUUUU-GUGGua-CCGa--GGG-CGGG- -5'
5902 5' -52.9 NC_001806.1 + 35342 0.73 0.732486
Target:  5'- gCGCGggGAACGCguUuGCUgauccCCCGCCCc -3'
miRNA:   3'- -GUGCuuUUUGUGguAcCGA-----GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 1682 0.73 0.742439
Target:  5'- gCGCGccGGGCGCCAUGGCgucgguggUCCCcgaggccgccGCCCg -3'
miRNA:   3'- -GUGCuuUUUGUGGUACCG--------AGGG----------CGGG- -5'
5902 5' -52.9 NC_001806.1 + 87299 0.73 0.742439
Target:  5'- gGCGGucucccgcGCGCCcuccGGCUCCCGCUCg -3'
miRNA:   3'- gUGCUuuu-----UGUGGua--CCGAGGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.