miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 5' -52.9 NC_001806.1 + 151692 0.7 0.859276
Target:  5'- gGCcGGGGGgGCCcgGGCUgCCCGCCg -3'
miRNA:   3'- gUGcUUUUUgUGGuaCCGA-GGGCGGg -5'
5902 5' -52.9 NC_001806.1 + 151106 0.7 0.851347
Target:  5'- uCGCGggGGuCGCgGggGGCUCCggCGCCCc -3'
miRNA:   3'- -GUGCuuUUuGUGgUa-CCGAGG--GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 150686 0.72 0.762034
Target:  5'- gGCGGc---CGCCgAUGGCcagUCCCGCCCc -3'
miRNA:   3'- gUGCUuuuuGUGG-UACCG---AGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 150596 0.67 0.961857
Target:  5'- gGCGGcccGGC-CCAUugGGCgguaacUCCCGCCCa -3'
miRNA:   3'- gUGCUuu-UUGuGGUA--CCG------AGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 150444 0.67 0.954333
Target:  5'- gGCGggGAAUACCggGGU---UGCCCa -3'
miRNA:   3'- gUGCuuUUUGUGGuaCCGaggGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 150260 0.66 0.968475
Target:  5'- uGCGucgguGCcCCggGGCuUCCCGCCUu -3'
miRNA:   3'- gUGCuuuu-UGuGGuaCCG-AGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 148485 0.66 0.976805
Target:  5'- --aGAuAAAguCCAcGGCcgugCCCGCCCu -3'
miRNA:   3'- gugCUuUUUguGGUaCCGa---GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 148240 0.69 0.910957
Target:  5'- aACGggGGGCGCgAUcaGGUUacgcccccuccccggCCCGCCCu -3'
miRNA:   3'- gUGCuuUUUGUGgUA--CCGA---------------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 148123 0.71 0.817646
Target:  5'- gGCuGggGGGCugCGUGagacGC-CCCGCCCg -3'
miRNA:   3'- gUG-CuuUUUGugGUAC----CGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 147518 0.66 0.976805
Target:  5'- cCGCgGGAGGGC-CCGUGcccaccCUCCaCGCCCg -3'
miRNA:   3'- -GUG-CUUUUUGuGGUACc-----GAGG-GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 147160 0.7 0.851347
Target:  5'- ----cAGGGCACCGacGGC-CCCGCCCg -3'
miRNA:   3'- gugcuUUUUGUGGUa-CCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 146798 0.66 0.974232
Target:  5'- -uCGggGGGCAUCAcgUGGUUaCCCGCg- -3'
miRNA:   3'- guGCuuUUUGUGGU--ACCGA-GGGCGgg -5'
5902 5' -52.9 NC_001806.1 + 146105 0.66 0.975285
Target:  5'- uCGCGGAAacuuAACACCcacacccaacccacuGUGGUUCUgGCuCCa -3'
miRNA:   3'- -GUGCUUU----UUGUGG---------------UACCGAGGgCG-GG- -5'
5902 5' -52.9 NC_001806.1 + 144952 0.7 0.881757
Target:  5'- aACGGccGGCccCCGUGGCggCCCgGCCCg -3'
miRNA:   3'- gUGCUuuUUGu-GGUACCGa-GGG-CGGG- -5'
5902 5' -52.9 NC_001806.1 + 144877 0.71 0.812337
Target:  5'- aCGCGAAAAAgGCcccccggaggcuuuuCcgGGUUCCCgGCCCg -3'
miRNA:   3'- -GUGCUUUUUgUG---------------GuaCCGAGGG-CGGG- -5'
5902 5' -52.9 NC_001806.1 + 144817 0.66 0.968475
Target:  5'- gACGAGGGGCccccgACCGcGGCgguccgggcCCCGUCCg -3'
miRNA:   3'- gUGCUUUUUG-----UGGUaCCGa--------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 143140 0.71 0.843213
Target:  5'- cCGCGGAuGGGCggGCCuacuUGGuUUCCCGCCCc -3'
miRNA:   3'- -GUGCUU-UUUG--UGGu---ACC-GAGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 140930 0.69 0.895603
Target:  5'- --aGAAAGacgGCGCUGUGGcCUCCCGUUCc -3'
miRNA:   3'- gugCUUUU---UGUGGUACC-GAGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 140535 0.66 0.979184
Target:  5'- aCACGggG-ACGgCggGGCagagccgCCCGUCCg -3'
miRNA:   3'- -GUGCuuUuUGUgGuaCCGa------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 137006 0.7 0.873747
Target:  5'- gGCGggGAGCGCCA--GCUagacggacagaaaCCCgGCCCg -3'
miRNA:   3'- gUGCuuUUUGUGGUacCGA-------------GGG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.