miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5908 5' -53.5 NC_001806.1 + 75842 0.66 0.963932
Target:  5'- aGCgGGCgaacagGCGCUGGGAACcaacgccaaggcggUGACCCuUGc -3'
miRNA:   3'- -CGgUCG------CGCGAUCUUUG--------------ACUGGGuAC- -5'
5908 5' -53.5 NC_001806.1 + 131354 0.66 0.962897
Target:  5'- --aGGCgGCGCUGucggagcuccccaccGAGGcCUGGCCCAUGa -3'
miRNA:   3'- cggUCG-CGCGAU---------------CUUU-GACUGGGUAC- -5'
5908 5' -53.5 NC_001806.1 + 86618 0.66 0.961486
Target:  5'- -aCAGCGCGCgcGAGAUgUGGCUCGc- -3'
miRNA:   3'- cgGUCGCGCGauCUUUG-ACUGGGUac -5'
5908 5' -53.5 NC_001806.1 + 24813 0.66 0.961486
Target:  5'- cGCCGGCGcCGCccgGGAuucGCUgGGCCUcgGc -3'
miRNA:   3'- -CGGUCGC-GCGa--UCUu--UGA-CUGGGuaC- -5'
5908 5' -53.5 NC_001806.1 + 3010 0.66 0.957797
Target:  5'- cGCCAGCGCGUcGGcgGCgu-CCgGUGc -3'
miRNA:   3'- -CGGUCGCGCGaUCuuUGacuGGgUAC- -5'
5908 5' -53.5 NC_001806.1 + 92888 0.66 0.957797
Target:  5'- cCCAGCGUGCaGGcuGC-GGCCgCGUGg -3'
miRNA:   3'- cGGUCGCGCGaUCuuUGaCUGG-GUAC- -5'
5908 5' -53.5 NC_001806.1 + 121455 0.66 0.953873
Target:  5'- cCCAGCG-GCcAGAucuacuGCUGGgCCAUGg -3'
miRNA:   3'- cGGUCGCgCGaUCUu-----UGACUgGGUAC- -5'
5908 5' -53.5 NC_001806.1 + 84513 0.66 0.953873
Target:  5'- cCCAuGUGCGCcauuacggagaUGGAggUUGACCCcUGg -3'
miRNA:   3'- cGGU-CGCGCG-----------AUCUuuGACUGGGuAC- -5'
5908 5' -53.5 NC_001806.1 + 114286 0.66 0.949709
Target:  5'- cGCCAuGCucaCGCUgcAGguGCUGGCCCAc- -3'
miRNA:   3'- -CGGU-CGc--GCGA--UCuuUGACUGGGUac -5'
5908 5' -53.5 NC_001806.1 + 55718 0.66 0.949709
Target:  5'- aCCucCGgGCUGGcgGCUGACCCGg- -3'
miRNA:   3'- cGGucGCgCGAUCuuUGACUGGGUac -5'
5908 5' -53.5 NC_001806.1 + 124396 0.67 0.945303
Target:  5'- aCCAGUGCuucacGGAGCUGGCCCGc- -3'
miRNA:   3'- cGGUCGCGcgau-CUUUGACUGGGUac -5'
5908 5' -53.5 NC_001806.1 + 147379 0.67 0.945303
Target:  5'- uGCCGGCGCG--AGggGggGACgCGUGg -3'
miRNA:   3'- -CGGUCGCGCgaUCuuUgaCUGgGUAC- -5'
5908 5' -53.5 NC_001806.1 + 76250 0.67 0.935751
Target:  5'- cGCgCGGCGCGCgaucGGAAGCguggcgcugGACCUg-- -3'
miRNA:   3'- -CG-GUCGCGCGa---UCUUUGa--------CUGGGuac -5'
5908 5' -53.5 NC_001806.1 + 78212 0.67 0.935751
Target:  5'- uGCCAGCGUuuucgGCcGGAGGCccuccGACCCGg- -3'
miRNA:   3'- -CGGUCGCG-----CGaUCUUUGa----CUGGGUac -5'
5908 5' -53.5 NC_001806.1 + 92947 0.67 0.935751
Target:  5'- gGCCcGCGCGCU-GAug--GACgCCGUGg -3'
miRNA:   3'- -CGGuCGCGCGAuCUuugaCUG-GGUAC- -5'
5908 5' -53.5 NC_001806.1 + 49315 0.67 0.935751
Target:  5'- -aCGGCGCGCgucGGAAGCcccGCCCAc- -3'
miRNA:   3'- cgGUCGCGCGa--UCUUUGac-UGGGUac -5'
5908 5' -53.5 NC_001806.1 + 59973 0.67 0.935751
Target:  5'- cGCCGGCGCgGCaccucuCUGGCCUcgGg -3'
miRNA:   3'- -CGGUCGCG-CGaucuuuGACUGGGuaC- -5'
5908 5' -53.5 NC_001806.1 + 4285 0.67 0.9306
Target:  5'- cGCCGGgGCuGCccggccguGAAGC-GGCCCGUGg -3'
miRNA:   3'- -CGGUCgCG-CGau------CUUUGaCUGGGUAC- -5'
5908 5' -53.5 NC_001806.1 + 74894 0.67 0.9306
Target:  5'- uGCCGGCGgGCUGGu--CgGACCUc-- -3'
miRNA:   3'- -CGGUCGCgCGAUCuuuGaCUGGGuac -5'
5908 5' -53.5 NC_001806.1 + 82952 0.67 0.9252
Target:  5'- -gCAGCGCGCagucGGGGAUUGuguCCCGUa -3'
miRNA:   3'- cgGUCGCGCGa---UCUUUGACu--GGGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.