Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5911 | 3' | -57.1 | NC_001806.1 | + | 150986 | 0.75 | 0.381917 |
Target: 5'- ----cCCACgagCCGCGGCGCGCcaGGCGg -3' miRNA: 3'- agauaGGUGa--GGUGCCGCGUGa-CCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 10101 | 0.74 | 0.40709 |
Target: 5'- --cGUCCACguacUCGCGGCGCAC-GGCGc -3' miRNA: 3'- agaUAGGUGa---GGUGCCGCGUGaCCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 147998 | 0.7 | 0.667846 |
Target: 5'- ----cCCGCggcgCCGCGGCucGCgACUGGCGg -3' miRNA: 3'- agauaGGUGa---GGUGCCG--CG-UGACCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 3335 | 0.7 | 0.64757 |
Target: 5'- --gGUCC-CUCCggccGCGGgGgGCUGGCGg -3' miRNA: 3'- agaUAGGuGAGG----UGCCgCgUGACCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 114340 | 0.7 | 0.677944 |
Target: 5'- gCUGcUCUGCUCgGCGGCGCccgACgcgGGCGc -3' miRNA: 3'- aGAU-AGGUGAGgUGCCGCG---UGa--CCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 42238 | 0.69 | 0.688007 |
Target: 5'- ----gCCGCggccCCGCgGGCGUACUGGCu -3' miRNA: 3'- agauaGGUGa---GGUG-CCGCGUGACCGc -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 86375 | 0.69 | 0.707984 |
Target: 5'- ----gCCACUCCuccGCGGgGCGCUcGGCu -3' miRNA: 3'- agauaGGUGAGG---UGCCgCGUGA-CCGc -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 67191 | 0.68 | 0.750942 |
Target: 5'- cUCgcccagCCGCUCggucugccggccuggCGgGGCGCGCUGGUGg -3' miRNA: 3'- -AGaua---GGUGAG---------------GUgCCGCGUGACCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 78672 | 0.68 | 0.756662 |
Target: 5'- gCUGgcggCaguGCUCCugGGCGCGCccgucgucgUGGCGc -3' miRNA: 3'- aGAUa---Gg--UGAGGugCCGCGUG---------ACCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 2755 | 0.68 | 0.78464 |
Target: 5'- -----aCACggCCACGGgGCGCgGGCGg -3' miRNA: 3'- agauagGUGa-GGUGCCgCGUGaCCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 136376 | 0.67 | 0.801745 |
Target: 5'- -----gCGCUCCGCGGCcuccgcgaccgugGCcaGCUGGCGg -3' miRNA: 3'- agauagGUGAGGUGCCG-------------CG--UGACCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 137684 | 0.67 | 0.80263 |
Target: 5'- cCgg-CCAC-CCACGGgGCGCUGcCGg -3' miRNA: 3'- aGauaGGUGaGGUGCCgCGUGACcGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 1538 | 0.67 | 0.811401 |
Target: 5'- --aGUCC-CUCCGCGGCccGCGCcaccgGGCc -3' miRNA: 3'- agaUAGGuGAGGUGCCG--CGUGa----CCGc -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 24077 | 0.67 | 0.811401 |
Target: 5'- -gUGUCgGCg-CugGGCGCACagGGCGu -3' miRNA: 3'- agAUAGgUGagGugCCGCGUGa-CCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 70628 | 0.67 | 0.820012 |
Target: 5'- ----aCCGaaaCCACGGCGCAcCUGGgGg -3' miRNA: 3'- agauaGGUga-GGUGCCGCGU-GACCgC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 46422 | 0.67 | 0.828455 |
Target: 5'- gUCU-UCUGCgCCGCGGUcggGCGcCUGGCGg -3' miRNA: 3'- -AGAuAGGUGaGGUGCCG---CGU-GACCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 101022 | 0.67 | 0.83426 |
Target: 5'- gCgg-CgGC-CCGCGGCGCucgaaaaucgcagcGCUGGCGg -3' miRNA: 3'- aGauaGgUGaGGUGCCGCG--------------UGACCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 70786 | 0.67 | 0.836721 |
Target: 5'- --gGUCCccggguuuuGCUUCAUGggucaguuucuaGCGCGCUGGCGg -3' miRNA: 3'- agaUAGG---------UGAGGUGC------------CGCGUGACCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 148105 | 0.67 | 0.793707 |
Target: 5'- gCUGUCCGagCCGCGGCcgGCUGGgGg -3' miRNA: 3'- aGAUAGGUgaGGUGCCGcgUGACCgC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 69883 | 0.67 | 0.799969 |
Target: 5'- cUCUGUCCACcuggCCGCGGCGacccagaucCGCUuccccgcccucgagGGCa -3' miRNA: 3'- -AGAUAGGUGa---GGUGCCGC---------GUGA--------------CCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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