Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5911 | 3' | -57.1 | NC_001806.1 | + | 102634 | 0.66 | 0.844804 |
Target: 5'- -----aCACaaCACGGCGCACUcgaaGGCGg -3' miRNA: 3'- agauagGUGagGUGCCGCGUGA----CCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 24606 | 0.66 | 0.852696 |
Target: 5'- ----cCCACUCgCACGccgccugcGCGCGCUGGgGc -3' miRNA: 3'- agauaGGUGAG-GUGC--------CGCGUGACCgC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 132680 | 0.66 | 0.867884 |
Target: 5'- -----gCGCUCCugGGgGC-CUGGCc -3' miRNA: 3'- agauagGUGAGGugCCgCGuGACCGc -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 116074 | 0.66 | 0.867884 |
Target: 5'- cCUG-CCGCguggauCGGCGCcauGCUGGCGg -3' miRNA: 3'- aGAUaGGUGaggu--GCCGCG---UGACCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 24841 | 0.66 | 0.867884 |
Target: 5'- cUCgg-CCACgggCCgcaGCGGCaccGUGCUGGCGg -3' miRNA: 3'- -AGauaGGUGa--GG---UGCCG---CGUGACCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 51313 | 0.66 | 0.875167 |
Target: 5'- cCUG-CCAaccugaUCCGCGGCGacaACgcgGGCGu -3' miRNA: 3'- aGAUaGGUg-----AGGUGCCGCg--UGa--CCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 78632 | 0.66 | 0.875167 |
Target: 5'- ----aCCGCacccCCGCGGCGCGCguuacGGCc -3' miRNA: 3'- agauaGGUGa---GGUGCCGCGUGa----CCGc -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 76283 | 0.66 | 0.881538 |
Target: 5'- cCUGgccgCCGCcgcggaggagauaUCCGCGGUGCGCaacgacccGGCGg -3' miRNA: 3'- aGAUa---GGUG-------------AGGUGCCGCGUGa-------CCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 144778 | 0.66 | 0.882236 |
Target: 5'- gUCUGUCCcCU-CACGGgGCGaaGGCc -3' miRNA: 3'- -AGAUAGGuGAgGUGCCgCGUgaCCGc -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 151164 | 0.66 | 0.882236 |
Target: 5'- gCgcgCCagguGCUCCGCGGUGaCGCgcaGGCGg -3' miRNA: 3'- aGauaGG----UGAGGUGCCGC-GUGa--CCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 29955 | 0.66 | 0.882236 |
Target: 5'- ----gUCGCgagCCGCGGCGCcGCggggGGCGu -3' miRNA: 3'- agauaGGUGa--GGUGCCGCG-UGa---CCGC- -5' |
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5911 | 3' | -57.1 | NC_001806.1 | + | 1950 | 0.66 | 0.882236 |
Target: 5'- cCgcgCCGCcggccagCgCACGGCGCACUgcacGGCGg -3' miRNA: 3'- aGauaGGUGa------G-GUGCCGCGUGA----CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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