miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 3' -57.1 NC_001806.1 + 69883 0.67 0.799969
Target:  5'- cUCUGUCCACcuggCCGCGGCGacccagaucCGCUuccccgcccucgagGGCa -3'
miRNA:   3'- -AGAUAGGUGa---GGUGCCGC---------GUGA--------------CCGc -5'
5911 3' -57.1 NC_001806.1 + 148105 0.67 0.793707
Target:  5'- gCUGUCCGagCCGCGGCcgGCUGGgGg -3'
miRNA:   3'- aGAUAGGUgaGGUGCCGcgUGACCgC- -5'
5911 3' -57.1 NC_001806.1 + 2755 0.68 0.78464
Target:  5'- -----aCACggCCACGGgGCGCgGGCGg -3'
miRNA:   3'- agauagGUGa-GGUGCCgCGUGaCCGC- -5'
5911 3' -57.1 NC_001806.1 + 78672 0.68 0.756662
Target:  5'- gCUGgcggCaguGCUCCugGGCGCGCccgucgucgUGGCGc -3'
miRNA:   3'- aGAUa---Gg--UGAGGugCCGCGUG---------ACCGC- -5'
5911 3' -57.1 NC_001806.1 + 67191 0.68 0.750942
Target:  5'- cUCgcccagCCGCUCggucugccggccuggCGgGGCGCGCUGGUGg -3'
miRNA:   3'- -AGaua---GGUGAG---------------GUgCCGCGUGACCGC- -5'
5911 3' -57.1 NC_001806.1 + 86375 0.69 0.707984
Target:  5'- ----gCCACUCCuccGCGGgGCGCUcGGCu -3'
miRNA:   3'- agauaGGUGAGG---UGCCgCGUGA-CCGc -5'
5911 3' -57.1 NC_001806.1 + 42238 0.69 0.688007
Target:  5'- ----gCCGCggccCCGCgGGCGUACUGGCu -3'
miRNA:   3'- agauaGGUGa---GGUG-CCGCGUGACCGc -5'
5911 3' -57.1 NC_001806.1 + 114340 0.7 0.677944
Target:  5'- gCUGcUCUGCUCgGCGGCGCccgACgcgGGCGc -3'
miRNA:   3'- aGAU-AGGUGAGgUGCCGCG---UGa--CCGC- -5'
5911 3' -57.1 NC_001806.1 + 147998 0.7 0.667846
Target:  5'- ----cCCGCggcgCCGCGGCucGCgACUGGCGg -3'
miRNA:   3'- agauaGGUGa---GGUGCCG--CG-UGACCGC- -5'
5911 3' -57.1 NC_001806.1 + 3335 0.7 0.64757
Target:  5'- --gGUCC-CUCCggccGCGGgGgGCUGGCGg -3'
miRNA:   3'- agaUAGGuGAGG----UGCCgCgUGACCGC- -5'
5911 3' -57.1 NC_001806.1 + 10101 0.74 0.40709
Target:  5'- --cGUCCACguacUCGCGGCGCAC-GGCGc -3'
miRNA:   3'- agaUAGGUGa---GGUGCCGCGUGaCCGC- -5'
5911 3' -57.1 NC_001806.1 + 150986 0.75 0.381917
Target:  5'- ----cCCACgagCCGCGGCGCGCcaGGCGg -3'
miRNA:   3'- agauaGGUGa--GGUGCCGCGUGa-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.