miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 305 0.66 0.428492
Target:  5'- cGGCCCCGccccccacGcCCGCCGCGcGcGCGCAc -3'
miRNA:   3'- -CCGGGGUcc------C-GGCGGCGC-CaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 1379 0.69 0.283533
Target:  5'- cGGCCCCc--GCCGCCGCcagcacGGUGCcgcuGCGGc -3'
miRNA:   3'- -CCGGGGuccCGGCGGCG------CCACG----CGUC- -5'
5911 5' -67.1 NC_001806.1 + 1457 0.77 0.07718
Target:  5'- gGGCCCCcGGGCCGUCGUcGUcgccGCGCAGc -3'
miRNA:   3'- -CCGGGGuCCCGGCGGCGcCA----CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 1588 0.72 0.171546
Target:  5'- cGCCCCAgcgccacguacacGGGCCGCaGCGGcGCGCc- -3'
miRNA:   3'- cCGGGGU-------------CCCGGCGgCGCCaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 1627 0.69 0.265463
Target:  5'- aGGCCCCAGcGCgCGCagGCGGcGUGCGa -3'
miRNA:   3'- -CCGGGGUCcCG-GCGg-CGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 1706 0.66 0.436814
Target:  5'- uGGuCCCCGaGGCCGCCGCccGGccguccaGCGCc- -3'
miRNA:   3'- -CC-GGGGUcCCGGCGGCG--CCa------CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 1782 0.69 0.296111
Target:  5'- cGGCgugUCC-GGGCCGaaGCGcGUGCGCAc -3'
miRNA:   3'- -CCG---GGGuCCCGGCggCGC-CACGCGUc -5'
5911 5' -67.1 NC_001806.1 + 1854 0.67 0.343525
Target:  5'- cGCgUCGGGGUacaGgCGCGcGUGCGCGGc -3'
miRNA:   3'- cCGgGGUCCCGg--CgGCGC-CACGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 2030 0.66 0.396167
Target:  5'- gGGCCCgucggcGGGCCaGUCGCaGGcGCGCAc -3'
miRNA:   3'- -CCGGGgu----CCCGG-CGGCG-CCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 2454 0.69 0.289768
Target:  5'- cGGcCCCCGGcGGCC-CCGUGGggGUGgGGg -3'
miRNA:   3'- -CC-GGGGUC-CCGGcGGCGCCa-CGCgUC- -5'
5911 5' -67.1 NC_001806.1 + 2653 0.77 0.073434
Target:  5'- aGGCCuCCAGGGCggcgGCCGCGG-GCGCc- -3'
miRNA:   3'- -CCGG-GGUCCCGg---CGGCGCCaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 2693 0.7 0.226938
Target:  5'- gGGCCCCGGgGGCUGCCGCc--GC-CAGc -3'
miRNA:   3'- -CCGGGGUC-CCGGCGGCGccaCGcGUC- -5'
5911 5' -67.1 NC_001806.1 + 2733 0.7 0.248338
Target:  5'- gGGCCCUcggcGGGCCGgCGCgacacggccacGGgGCGCGGg -3'
miRNA:   3'- -CCGGGGu---CCCGGCgGCG-----------CCaCGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 2788 0.75 0.106354
Target:  5'- cGGCggCCCGGGG-CGCCGCGGgcUGgGCGGg -3'
miRNA:   3'- -CCG--GGGUCCCgGCGGCGCC--ACgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 2828 0.79 0.053023
Target:  5'- gGGCCCCGGGGgCGUggaggggggCGCGG-GCGCGGg -3'
miRNA:   3'- -CCGGGGUCCCgGCG---------GCGCCaCGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 3024 0.7 0.253943
Target:  5'- cGGCgUCCGGugcgcuGGCCGCCGCcgccagcaGGggGCGCAGg -3'
miRNA:   3'- -CCG-GGGUC------CCGGCGGCG--------CCa-CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 3086 0.69 0.277404
Target:  5'- aGGUCCgCGGcggcGGCgGCCGCGGagcucggcagGCGCGGg -3'
miRNA:   3'- -CCGGG-GUC----CCGgCGGCGCCa---------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 3142 0.69 0.295472
Target:  5'- gGGgCCCAGGGCC-CCGgcgaccaggcucaCGGcGCGCAc -3'
miRNA:   3'- -CCgGGGUCCCGGcGGC-------------GCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 3183 0.67 0.365456
Target:  5'- cGGCCaCGGcGGCCucgcuGCCGcCGGccacGCGCAGg -3'
miRNA:   3'- -CCGGgGUC-CCGG-----CGGC-GCCa---CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 3326 0.67 0.365456
Target:  5'- gGGCCCgCGGGuCCcuccgGCCGCGGgggGCugGCGGg -3'
miRNA:   3'- -CCGGG-GUCCcGG-----CGGCGCCa--CG--CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.