miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 23464 0.82 0.031946
Target:  5'- cGCCCC-GGGCCGCCGCG--GCGCAGg -3'
miRNA:   3'- cCGGGGuCCCGGCGGCGCcaCGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 2828 0.79 0.053023
Target:  5'- gGGCCCCGGGGgCGUggaggggggCGCGG-GCGCGGg -3'
miRNA:   3'- -CCGGGGUCCCgGCG---------GCGCCaCGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 77966 0.78 0.06165
Target:  5'- cGGCCCCGGGGCCGCCGCucGGacCcCAGa -3'
miRNA:   3'- -CCGGGGUCCCGGCGGCG--CCacGcGUC- -5'
5911 5' -67.1 NC_001806.1 + 2653 0.77 0.073434
Target:  5'- aGGCCuCCAGGGCggcgGCCGCGG-GCGCc- -3'
miRNA:   3'- -CCGG-GGUCCCGg---CGGCGCCaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 1457 0.77 0.07718
Target:  5'- gGGCCCCcGGGCCGUCGUcGUcgccGCGCAGc -3'
miRNA:   3'- -CCGGGGuCCCGGCGGCGcCA----CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 125849 0.77 0.079121
Target:  5'- gGGCCCCc-GGCCGCCGCGGacgccgugGCGCc- -3'
miRNA:   3'- -CCGGGGucCCGGCGGCGCCa-------CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 67519 0.77 0.081918
Target:  5'- aGCCCU-GGGCCGUCGCGGcgagagaucgggggGCGCAGg -3'
miRNA:   3'- cCGGGGuCCCGGCGGCGCCa-------------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 68591 0.76 0.085018
Target:  5'- cGGCCCUGGGGCCGguCCGCGuccgccaGUGCGCc- -3'
miRNA:   3'- -CCGGGGUCCCGGC--GGCGC-------CACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 3795 0.76 0.091784
Target:  5'- uGGCCaCGGcGGCCGCCGCG-UGCGcCAGg -3'
miRNA:   3'- -CCGGgGUC-CCGGCGGCGCcACGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 13503 0.75 0.103529
Target:  5'- aGGCCCCgcggacaaucuggGGGGCCuCCGaCGGUGCGUuuAGg -3'
miRNA:   3'- -CCGGGG-------------UCCCGGcGGC-GCCACGCG--UC- -5'
5911 5' -67.1 NC_001806.1 + 27842 0.75 0.106094
Target:  5'- uGGUCCCcggggacGGGGCCGCCccGCGGUGgGCc- -3'
miRNA:   3'- -CCGGGG-------UCCCGGCGG--CGCCACgCGuc -5'
5911 5' -67.1 NC_001806.1 + 2788 0.75 0.106354
Target:  5'- cGGCggCCCGGGG-CGCCGCGGgcUGgGCGGg -3'
miRNA:   3'- -CCG--GGGUCCCgGCGGCGCC--ACgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 103798 0.75 0.106354
Target:  5'- -cCCCCGGGcggcGCCGCCGCGGcgGCGaCGGg -3'
miRNA:   3'- ccGGGGUCC----CGGCGGCGCCa-CGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 151452 0.74 0.117247
Target:  5'- cGGCggCGGGGCgGCCGCGG-GCGCGc -3'
miRNA:   3'- -CCGggGUCCCGgCGGCGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 83030 0.74 0.120128
Target:  5'- -cCCCCGGGGUccuggcgagCGUCGCGGUGUGCGa -3'
miRNA:   3'- ccGGGGUCCCG---------GCGGCGCCACGCGUc -5'
5911 5' -67.1 NC_001806.1 + 37782 0.74 0.12609
Target:  5'- cGCUCCGGGGCCGgggcgcggggguCCGCGG-GCGgGGg -3'
miRNA:   3'- cCGGGGUCCCGGC------------GGCGCCaCGCgUC- -5'
5911 5' -67.1 NC_001806.1 + 71961 0.73 0.145653
Target:  5'- gGGCCCU-GGGCCGCCGCGcaUGUGUu- -3'
miRNA:   3'- -CCGGGGuCCCGGCGGCGCc-ACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 64130 0.73 0.145653
Target:  5'- cGCCCCAGGGCgauguggcgcaUGCCGCGcGUGgcccgGCAGg -3'
miRNA:   3'- cCGGGGUCCCG-----------GCGGCGC-CACg----CGUC- -5'
5911 5' -67.1 NC_001806.1 + 145719 0.73 0.149172
Target:  5'- cGGCCCaCcuGGCCGCgCG-GGUGCGCGu -3'
miRNA:   3'- -CCGGG-GucCCGGCG-GCgCCACGCGUc -5'
5911 5' -67.1 NC_001806.1 + 135607 0.73 0.149172
Target:  5'- cGCUCCAGGGCCcCCGCuGuUGCGCGc -3'
miRNA:   3'- cCGGGGUCCCGGcGGCGcC-ACGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.