miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 49367 0.73 0.15168
Target:  5'- cGCCCC-GGGCCcgaugcggcccguaGCCaGuCGGUGCGCGGu -3'
miRNA:   3'- cCGGGGuCCCGG--------------CGG-C-GCCACGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 23110 0.73 0.156442
Target:  5'- gGGCCCUGGGccccgcGCUGCCGCGGgacccGCGCc- -3'
miRNA:   3'- -CCGGGGUCC------CGGCGGCGCCa----CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 150971 0.73 0.156442
Target:  5'- cGGCCCgCucgcGGGCCcacgaGCCGCGGcGCGcCAGg -3'
miRNA:   3'- -CCGGG-Gu---CCCGG-----CGGCGCCaCGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 115120 0.72 0.164031
Target:  5'- uGCgCCCAGG--UGCCGCGGcGCGCAGg -3'
miRNA:   3'- cCG-GGGUCCcgGCGGCGCCaCGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 147679 0.72 0.167949
Target:  5'- cGCCCCgGGGGCCGgggCGCGG-GgGCGGg -3'
miRNA:   3'- cCGGGG-UCCCGGCg--GCGCCaCgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 107038 0.72 0.167949
Target:  5'- cGCCCgCGGGGCCGCgGgCuGUGcCGCGGa -3'
miRNA:   3'- cCGGG-GUCCCGGCGgC-GcCAC-GCGUC- -5'
5911 5' -67.1 NC_001806.1 + 1588 0.72 0.171546
Target:  5'- cGCCCCAgcgccacguacacGGGCCGCaGCGGcGCGCc- -3'
miRNA:   3'- cCGGGGU-------------CCCGGCGgCGCCaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 24666 0.72 0.17195
Target:  5'- uGGCgCUGGGGCgCGagGCGGUGCGCGc -3'
miRNA:   3'- -CCGgGGUCCCG-GCggCGCCACGCGUc -5'
5911 5' -67.1 NC_001806.1 + 24796 0.72 0.17195
Target:  5'- cGGCCCgGGGGCCcuGCCGCcg-GCGCc- -3'
miRNA:   3'- -CCGGGgUCCCGG--CGGCGccaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 20180 0.72 0.176036
Target:  5'- cGcCCCCGGGGCCGgCGCGGagucgggcacgGCGcCAGu -3'
miRNA:   3'- cC-GGGGUCCCGGCgGCGCCa----------CGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 32988 0.72 0.180208
Target:  5'- gGGCCCCGggccGGGCCGCCaCGGggGC-CGGc -3'
miRNA:   3'- -CCGGGGU----CCCGGCGGcGCCa-CGcGUC- -5'
5911 5' -67.1 NC_001806.1 + 6072 0.72 0.180208
Target:  5'- cGGCCCCGggggcGGGCCcggGCgGCGGgGgGCGGg -3'
miRNA:   3'- -CCGGGGU-----CCCGG---CGgCGCCaCgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 102354 0.72 0.180208
Target:  5'- -cCCCCGGGGCCGCCgggagcaccccGUGGUGCauCAGc -3'
miRNA:   3'- ccGGGGUCCCGGCGG-----------CGCCACGc-GUC- -5'
5911 5' -67.1 NC_001806.1 + 77289 0.72 0.180208
Target:  5'- uGGCCCCAuGGGCgGuggaggaguuCCGgGGcGCGCGGg -3'
miRNA:   3'- -CCGGGGU-CCCGgC----------GGCgCCaCGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 67180 0.72 0.181901
Target:  5'- uGGCCCCAGGccucgcccaGCCGCUcggucugccggccugGCGGgGCGCGc -3'
miRNA:   3'- -CCGGGGUCC---------CGGCGG---------------CGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 33980 0.71 0.188816
Target:  5'- cGGgCCgGGGGUCGCCGgGGcagGgGCGGg -3'
miRNA:   3'- -CCgGGgUCCCGGCGGCgCCa--CgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 76486 0.71 0.188816
Target:  5'- uGGCCgauaCCAaGGaCGCCGUGGUGCGCGc -3'
miRNA:   3'- -CCGG----GGUcCCgGCGGCGCCACGCGUc -5'
5911 5' -67.1 NC_001806.1 + 4453 0.71 0.193254
Target:  5'- cGCCCgGGGGCUGCCGgCGccGCGCu- -3'
miRNA:   3'- cCGGGgUCCCGGCGGC-GCcaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 50151 0.71 0.193254
Target:  5'- cGGCCCCGa---CGCCGCGGUGUuccGCAGc -3'
miRNA:   3'- -CCGGGGUcccgGCGGCGCCACG---CGUC- -5'
5911 5' -67.1 NC_001806.1 + 103139 0.71 0.197783
Target:  5'- cGGCguucUCCAGGGCagcggcaGCCGCuGUGCGCuGg -3'
miRNA:   3'- -CCG----GGGUCCCGg------CGGCGcCACGCGuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.