miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 39182 0.66 0.420265
Target:  5'- cGCCCCGGGGCgGCgGCcuugucUGCGUu- -3'
miRNA:   3'- cCGGGGUCCCGgCGgCGcc----ACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 71035 0.66 0.420265
Target:  5'- aGCCCCGcGGCCGaCCGCGucGUGCu- -3'
miRNA:   3'- cCGGGGUcCCGGC-GGCGCcaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 43287 0.66 0.420265
Target:  5'- cGCCCuCGGaGGCggaGCCGCGGc-UGCAGg -3'
miRNA:   3'- cCGGG-GUC-CCGg--CGGCGCCacGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 25942 0.66 0.412134
Target:  5'- gGGCgUgGGGGCgggGCCGCGGgaGCGgGGg -3'
miRNA:   3'- -CCGgGgUCCCGg--CGGCGCCa-CGCgUC- -5'
5911 5' -67.1 NC_001806.1 + 37359 0.66 0.412134
Target:  5'- gGGUCCUGGGGgCGCaGCGGcagguUGUGguGg -3'
miRNA:   3'- -CCGGGGUCCCgGCGgCGCC-----ACGCguC- -5'
5911 5' -67.1 NC_001806.1 + 50489 0.66 0.412134
Target:  5'- uGCCCCuGGGaaGCCccGCGGU-CGUGGg -3'
miRNA:   3'- cCGGGGuCCCggCGG--CGCCAcGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 78231 0.66 0.411326
Target:  5'- aGGCCCUccgacccGGGGCCucauguucgGCaCGCGGcUG-GCAGa -3'
miRNA:   3'- -CCGGGG-------UCCCGG---------CG-GCGCC-ACgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 132681 0.66 0.4041
Target:  5'- cGCUCCugGGGGCCuggcCCGCGGUGgGggcCAGg -3'
miRNA:   3'- cCGGGG--UCCCGGc---GGCGCCACgC---GUC- -5'
5911 5' -67.1 NC_001806.1 + 151076 0.66 0.4041
Target:  5'- gGGUCgCgGGGGUCGCgGgGGU-CGCGGg -3'
miRNA:   3'- -CCGG-GgUCCCGGCGgCgCCAcGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 71103 0.66 0.4041
Target:  5'- cGGCCCCcuGGGCCagacgaCCGCGGUuC-CGGa -3'
miRNA:   3'- -CCGGGGu-CCCGGc-----GGCGCCAcGcGUC- -5'
5911 5' -67.1 NC_001806.1 + 88145 0.66 0.4041
Target:  5'- uGCUCCAGGGCgGUgGUGGacagGuCGUAGa -3'
miRNA:   3'- cCGGGGUCCCGgCGgCGCCa---C-GCGUC- -5'
5911 5' -67.1 NC_001806.1 + 83241 0.66 0.4041
Target:  5'- cGCCCCcucaAGGGC--CCGCGGggGgGCGGg -3'
miRNA:   3'- cCGGGG----UCCCGgcGGCGCCa-CgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 120901 0.66 0.4041
Target:  5'- uGCCCCGgccggauucccGGGCCGgagcUCGCGGcacGCGCGa -3'
miRNA:   3'- cCGGGGU-----------CCCGGC----GGCGCCa--CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 20355 0.66 0.403303
Target:  5'- cGGCCCUuGGGCCGCcCGCcgucccguuGGUcccggcguccggcGgGCGGg -3'
miRNA:   3'- -CCGGGGuCCCGGCG-GCG---------CCA-------------CgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 28593 0.66 0.396167
Target:  5'- aGGa-CCGGGGUCGCCGUguuGGggGCGUGGu -3'
miRNA:   3'- -CCggGGUCCCGGCGGCG---CCa-CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 60477 0.66 0.396167
Target:  5'- aGGCCCCcucugccgccGGCCGCCGgCGGcaccgagacGCGCGu -3'
miRNA:   3'- -CCGGGGuc--------CCGGCGGC-GCCa--------CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 65462 0.66 0.396167
Target:  5'- cGGCCCCcGGGUC-CUGgGG-GCGCc- -3'
miRNA:   3'- -CCGGGGuCCCGGcGGCgCCaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 72014 0.66 0.396167
Target:  5'- aGuaCCCAgGGGCgCGCgGCGGacUGCGCu- -3'
miRNA:   3'- -CcgGGGU-CCCG-GCGgCGCC--ACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 2030 0.66 0.396167
Target:  5'- gGGCCCgucggcGGGCCaGUCGCaGGcGCGCAc -3'
miRNA:   3'- -CCGGGgu----CCCGG-CGGCG-CCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 119557 0.66 0.396167
Target:  5'- gGGCgCCaugGGGGCgGCUgacgcagauGCGGUGCugGCGGg -3'
miRNA:   3'- -CCGgGG---UCCCGgCGG---------CGCCACG--CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.