miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 100089 0.66 0.393806
Target:  5'- cGGaCCCCAGGGUCucCCGCGGccgGCugaccgcccgccugGCGGu -3'
miRNA:   3'- -CC-GGGGUCCCGGc-GGCGCCa--CG--------------CGUC- -5'
5911 5' -67.1 NC_001806.1 + 24837 0.67 0.388335
Target:  5'- gGGCCUCGgccacGGGCCGCaGCGGcaccGUGCuGg -3'
miRNA:   3'- -CCGGGGU-----CCCGGCGgCGCCa---CGCGuC- -5'
5911 5' -67.1 NC_001806.1 + 26951 0.67 0.388335
Target:  5'- gGGCCUCGGccgcccgccuGGCgCGCCGCGGcuCGUGGg -3'
miRNA:   3'- -CCGGGGUC----------CCG-GCGGCGCCacGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 66813 0.67 0.388335
Target:  5'- cGGCCgagCGGGGCCGgcCCGgguggcCGGUGUGCGc -3'
miRNA:   3'- -CCGGg--GUCCCGGC--GGC------GCCACGCGUc -5'
5911 5' -67.1 NC_001806.1 + 29785 0.67 0.388335
Target:  5'- cGCCCCcccacgcagAGGcGCCGCCGCGccccccGUGacggGCGGg -3'
miRNA:   3'- cCGGGG---------UCC-CGGCGGCGC------CACg---CGUC- -5'
5911 5' -67.1 NC_001806.1 + 76285 0.67 0.388335
Target:  5'- uGGCCgCC---GCCGCggaggagauaucCGCGGUGCGCAa -3'
miRNA:   3'- -CCGG-GGuccCGGCG------------GCGCCACGCGUc -5'
5911 5' -67.1 NC_001806.1 + 115230 0.67 0.380605
Target:  5'- -cCCCCGGGgacgcGCCGCCGgGG-GCGUu- -3'
miRNA:   3'- ccGGGGUCC-----CGGCGGCgCCaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 30178 0.67 0.380605
Target:  5'- cGCCCC-GGGCCccccgcguCCGCGGccGCGuCGGg -3'
miRNA:   3'- cCGGGGuCCCGGc-------GGCGCCa-CGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 4309 0.67 0.380605
Target:  5'- cGGCCCguGGcGUCGCgGCcGGccaccgccGCGCGGg -3'
miRNA:   3'- -CCGGGguCC-CGGCGgCG-CCa-------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 22122 0.67 0.372978
Target:  5'- gGGCCUCugGGGGgCGCCcgagGCGGaggagGCGCGa -3'
miRNA:   3'- -CCGGGG--UCCCgGCGG----CGCCa----CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 69397 0.67 0.372978
Target:  5'- cGGCCCUggaGGGGUUucugGCgGCGGgcguccccGCGCGGa -3'
miRNA:   3'- -CCGGGG---UCCCGG----CGgCGCCa-------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 88654 0.67 0.372978
Target:  5'- cGCgCCCGGGGaCUcgcgcaggGCCGCGGccaUGCGCu- -3'
miRNA:   3'- cCG-GGGUCCC-GG--------CGGCGCC---ACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 99931 0.67 0.372978
Target:  5'- uGGUCCCGggagaauggcGGGCCGCgCGCcGGgagucgaccccGCGCGGc -3'
miRNA:   3'- -CCGGGGU----------CCCGGCG-GCG-CCa----------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 136363 0.67 0.372978
Target:  5'- --aCCCGGGGCCGgCGCGcucCGCGGc -3'
miRNA:   3'- ccgGGGUCCCGGCgGCGCcacGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 144603 0.67 0.372978
Target:  5'- gGGCCCCccugcagccGGGGCgGCCaaGGgGCGuCGGc -3'
miRNA:   3'- -CCGGGG---------UCCCGgCGGcgCCaCGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 88073 0.67 0.369957
Target:  5'- aGGCCCCu-GGCCGCCaGCucguucaGGUGggauucggggagguCGCAGg -3'
miRNA:   3'- -CCGGGGucCCGGCGG-CG-------CCAC--------------GCGUC- -5'
5911 5' -67.1 NC_001806.1 + 3183 0.67 0.365456
Target:  5'- cGGCCaCGGcGGCCucgcuGCCGcCGGccacGCGCAGg -3'
miRNA:   3'- -CCGGgGUC-CCGG-----CGGC-GCCa---CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 147759 0.67 0.365456
Target:  5'- nGGUCCCGacGCgGCCGCGGa-CGCGGg -3'
miRNA:   3'- -CCGGGGUccCGgCGGCGCCacGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 3326 0.67 0.365456
Target:  5'- gGGCCCgCGGGuCCcuccgGCCGCGGgggGCugGCGGg -3'
miRNA:   3'- -CCGGG-GUCCcGG-----CGGCGCCa--CG--CGUC- -5'
5911 5' -67.1 NC_001806.1 + 45298 0.67 0.35804
Target:  5'- gGGCCCgCgcgGGGaGCCGCCcggcgaggaggGCGG-GCGCGa -3'
miRNA:   3'- -CCGGG-G---UCC-CGGCGG-----------CGCCaCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.