miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5922 5' -62 NC_001806.1 + 23243 0.81 0.072108
Target:  5'- cGaCGCGCUGgcGgCCGCCGCCGCCUc -3'
miRNA:   3'- aCaGCGCGACuaCgGGUGGCGGCGGA- -5'
5922 5' -62 NC_001806.1 + 76271 0.77 0.154456
Target:  5'- cGUgGCGCUGGaccUGgCCGCCGCCGCg- -3'
miRNA:   3'- aCAgCGCGACU---ACgGGUGGCGGCGga -5'
5922 5' -62 NC_001806.1 + 26647 0.75 0.206833
Target:  5'- ---gGCGCcaGAggcccgGCCCACCGCCGCCg -3'
miRNA:   3'- acagCGCGa-CUa-----CGGGUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 80256 0.74 0.216931
Target:  5'- gUGUUGCGCccgGAgGCCCGguuucCCGCCGCCc -3'
miRNA:   3'- -ACAGCGCGa--CUaCGGGU-----GGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 78606 0.74 0.227447
Target:  5'- cGUCGC-C--GUGCCgGCCGCCGCCa -3'
miRNA:   3'- aCAGCGcGacUACGGgUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 139909 0.73 0.261601
Target:  5'- cUGUCGCGCcGAauuuugUGCCUACCGCUuuauagGCCg -3'
miRNA:   3'- -ACAGCGCGaCU------ACGGGUGGCGG------CGGa -5'
5922 5' -62 NC_001806.1 + 3027 0.73 0.280191
Target:  5'- cGUCcgguGCGCUGG---CCGCCGCCGCCa -3'
miRNA:   3'- aCAG----CGCGACUacgGGUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 24622 0.73 0.280191
Target:  5'- cUGcgCGCGCUGggGCCUggGCgCGCCGCUg -3'
miRNA:   3'- -ACa-GCGCGACuaCGGG--UG-GCGGCGGa -5'
5922 5' -62 NC_001806.1 + 94491 0.72 0.293158
Target:  5'- -cUCGCGCg---GCgCCACCGCCGCgCUg -3'
miRNA:   3'- acAGCGCGacuaCG-GGUGGCGGCG-GA- -5'
5922 5' -62 NC_001806.1 + 102663 0.72 0.320485
Target:  5'- aGUgGCGCUGGcccacauacaGCCgGCCGCaCGCCUg -3'
miRNA:   3'- aCAgCGCGACUa---------CGGgUGGCG-GCGGA- -5'
5922 5' -62 NC_001806.1 + 60026 0.72 0.320485
Target:  5'- aGcCGCGCUGccGUCCGCCG-CGCCc -3'
miRNA:   3'- aCaGCGCGACuaCGGGUGGCgGCGGa -5'
5922 5' -62 NC_001806.1 + 148013 0.71 0.342204
Target:  5'- -cUCGCGaCUGGcggGagCCGCCGCCGCCg -3'
miRNA:   3'- acAGCGC-GACUa--Cg-GGUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 23891 0.71 0.342204
Target:  5'- cGUgCGCGUggUGGUGCUguacuCGCCGCUGCCg -3'
miRNA:   3'- aCA-GCGCG--ACUACGG-----GUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 26363 0.71 0.364966
Target:  5'- --aCGCucuCUGucuccaugGCCCGCCGCCGCCg -3'
miRNA:   3'- acaGCGc--GACua------CGGGUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 132067 0.7 0.372782
Target:  5'- ---aGCGUcgUGggGCCCGcCCGCCGCCc -3'
miRNA:   3'- acagCGCG--ACuaCGGGU-GGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 26495 0.7 0.380711
Target:  5'- aGgagCGCGCccgcgGccGcCCCGCCGCCGCCc -3'
miRNA:   3'- aCa--GCGCGa----CuaC-GGGUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 73184 0.7 0.388752
Target:  5'- cGagGCGCUGAaGaCUCGCCGCuCGCCc -3'
miRNA:   3'- aCagCGCGACUaC-GGGUGGCG-GCGGa -5'
5922 5' -62 NC_001806.1 + 58210 0.7 0.389562
Target:  5'- gGUCGUGaggaagaacuugagGGUGCCC-CCGCCGaCCUg -3'
miRNA:   3'- aCAGCGCga------------CUACGGGuGGCGGC-GGA- -5'
5922 5' -62 NC_001806.1 + 100628 0.7 0.405165
Target:  5'- gUGUCcgGCGaucccgGCCUGCCGCCGCCg -3'
miRNA:   3'- -ACAG--CGCgacua-CGGGUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 50232 0.7 0.413533
Target:  5'- cUGUCGCGUgGccGCCCGCUauGCCgGCCg -3'
miRNA:   3'- -ACAGCGCGaCuaCGGGUGG--CGG-CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.