miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5922 5' -62 NC_001806.1 + 329 0.7 0.413533
Target:  5'- cG-CGCGCgcacGccGCCCggACCGCCGCCc -3'
miRNA:   3'- aCaGCGCGa---CuaCGGG--UGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 2681 0.68 0.484088
Target:  5'- cGcCGUgugGCUGG-GCCCcgggggcuGCCGCCGCCa -3'
miRNA:   3'- aCaGCG---CGACUaCGGG--------UGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 3027 0.73 0.280191
Target:  5'- cGUCcgguGCGCUGG---CCGCCGCCGCCa -3'
miRNA:   3'- aCAG----CGCGACUacgGGUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 3171 0.67 0.577482
Target:  5'- cGgCGCGCacggcggccacgGcgGCCuCGCUGCCGCCg -3'
miRNA:   3'- aCaGCGCGa-----------CuaCGG-GUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 4049 0.7 0.413533
Target:  5'- cGUCGCccaGCUcgGgcGCCCACacgGCCGCCg -3'
miRNA:   3'- aCAGCG---CGA--CuaCGGGUGg--CGGCGGa -5'
5922 5' -62 NC_001806.1 + 4314 0.67 0.55022
Target:  5'- cGUgGCGUcGcgGCcggCCACCGCCGCg- -3'
miRNA:   3'- aCAgCGCGaCuaCG---GGUGGCGGCGga -5'
5922 5' -62 NC_001806.1 + 4374 0.69 0.456916
Target:  5'- gGcCGCGggGGUcCUCGCCGCCGCCc -3'
miRNA:   3'- aCaGCGCgaCUAcGGGUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 4931 0.68 0.530036
Target:  5'- cGUCcucgccgGCGUcGGUGCCCGCCGCggggGCCc -3'
miRNA:   3'- aCAG-------CGCGaCUACGGGUGGCGg---CGGa -5'
5922 5' -62 NC_001806.1 + 16342 0.67 0.569658
Target:  5'- -cUCGUGCUcGUGUaCCACC-CCGCCUu -3'
miRNA:   3'- acAGCGCGAcUACG-GGUGGcGGCGGA- -5'
5922 5' -62 NC_001806.1 + 16499 0.66 0.60898
Target:  5'- cGcCGCgGCUGAUgGCUCGa-GCCGCCUc -3'
miRNA:   3'- aCaGCG-CGACUA-CGGGUggCGGCGGA- -5'
5922 5' -62 NC_001806.1 + 18828 0.66 0.60898
Target:  5'- gUGUUGCGCaggUGcAUGCCCcagguuCCGCCGgacaCCUg -3'
miRNA:   3'- -ACAGCGCG---AC-UACGGGu-----GGCGGC----GGA- -5'
5922 5' -62 NC_001806.1 + 20142 0.68 0.521467
Target:  5'- aUGU-GCGCcgGAgagacccGCCCcCCGCCGCCc -3'
miRNA:   3'- -ACAgCGCGa-CUa------CGGGuGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 21578 0.69 0.430585
Target:  5'- cUGUCGcCGCgcccgccgGCCCAgCCGCCGCg- -3'
miRNA:   3'- -ACAGC-GCGacua----CGGGU-GGCGGCGga -5'
5922 5' -62 NC_001806.1 + 22643 0.69 0.430585
Target:  5'- aG-CGCGC-GGUGCCCGCCggguacggcGCCGCg- -3'
miRNA:   3'- aCaGCGCGaCUACGGGUGG---------CGGCGga -5'
5922 5' -62 NC_001806.1 + 23012 0.7 0.422007
Target:  5'- cGaCGCGCUGGUGCUCAUgCGCCuGCg- -3'
miRNA:   3'- aCaGCGCGACUACGGGUG-GCGG-CGga -5'
5922 5' -62 NC_001806.1 + 23139 0.66 0.648557
Target:  5'- --cCGCGCc--UGCcgagcuccgcggCCGCCGCCGCCg -3'
miRNA:   3'- acaGCGCGacuACG------------GGUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 23243 0.81 0.072108
Target:  5'- cGaCGCGCUGgcGgCCGCCGCCGCCUc -3'
miRNA:   3'- aCaGCGCGACuaCgGGUGGCGGCGGA- -5'
5922 5' -62 NC_001806.1 + 23508 0.69 0.430585
Target:  5'- gUGUCGCGCcg--GCCCGCCGaggGCCc -3'
miRNA:   3'- -ACAGCGCGacuaCGGGUGGCgg-CGGa -5'
5922 5' -62 NC_001806.1 + 23714 0.69 0.465884
Target:  5'- cGcCGCGC-GGUGCgCCGggcccgcccCCGCCGCCc -3'
miRNA:   3'- aCaGCGCGaCUACG-GGU---------GGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 23891 0.71 0.342204
Target:  5'- cGUgCGCGUggUGGUGCUguacuCGCCGCUGCCg -3'
miRNA:   3'- aCA-GCGCG--ACUACGG-----GUGGCGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.