miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5925 5' -60.4 NC_001806.1 + 20374 0.78 0.172047
Target:  5'- cGUCCcguuGGUCCC-GGCGuCCGGCGGGCGGg -3'
miRNA:   3'- -UAGG----CUAGGGuCCGC-GGCUGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 78373 0.77 0.199127
Target:  5'- aGUCCcg-CCCAGGCGCUGGCGG-CGGu -3'
miRNA:   3'- -UAGGcuaGGGUCCGCGGCUGCCuGUC- -5'
5925 5' -60.4 NC_001806.1 + 75784 0.75 0.252481
Target:  5'- cUCCGucgCCugCAGGCGCUGGCGGGCAc -3'
miRNA:   3'- uAGGCua-GG--GUCCGCGGCUGCCUGUc -5'
5925 5' -60.4 NC_001806.1 + 1420 0.74 0.309381
Target:  5'- -gCCGAggCCCAgcgaaucccgggcGGCGCCGGCGG-CAGg -3'
miRNA:   3'- uaGGCUa-GGGU-------------CCGCGGCUGCCuGUC- -5'
5925 5' -60.4 NC_001806.1 + 38376 0.72 0.361421
Target:  5'- uGUCCGAUUCCAGGuCGUCG-CGG-CGGc -3'
miRNA:   3'- -UAGGCUAGGGUCC-GCGGCuGCCuGUC- -5'
5925 5' -60.4 NC_001806.1 + 6076 0.72 0.369222
Target:  5'- -cCCGGgggcgggCCCGGGCGgCGGgGGGCGGg -3'
miRNA:   3'- uaGGCUa------GGGUCCGCgGCUgCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 115112 0.72 0.377139
Target:  5'- uGUUCGGgugcgCCCAGGUGCCG-CGGcgcGCAGg -3'
miRNA:   3'- -UAGGCUa----GGGUCCGCGGCuGCC---UGUC- -5'
5925 5' -60.4 NC_001806.1 + 52699 0.72 0.38436
Target:  5'- cGUCCacccggaGGUUCCggAGGCGCCGcGCGGACGGc -3'
miRNA:   3'- -UAGG-------CUAGGG--UCCGCGGC-UGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 56915 0.71 0.426971
Target:  5'- -gCCGAcgaccaUCCCcaGGGUGCCGACGaACAGg -3'
miRNA:   3'- uaGGCU------AGGG--UCCGCGGCUGCcUGUC- -5'
5925 5' -60.4 NC_001806.1 + 151313 0.71 0.426971
Target:  5'- -gCCGggCCuCuGGCGCCGGCucGGGCGGg -3'
miRNA:   3'- uaGGCuaGG-GuCCGCGGCUG--CCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 130544 0.71 0.44443
Target:  5'- cUCCGGUCCgAugucGCGCCGGCGGAa-- -3'
miRNA:   3'- uAGGCUAGGgUc---CGCGGCUGCCUguc -5'
5925 5' -60.4 NC_001806.1 + 5464 0.7 0.458681
Target:  5'- cGUCCucgggcucauauaGUCCCAGGgGCCGGCGGGaAGg -3'
miRNA:   3'- -UAGGc------------UAGGGUCCgCGGCUGCCUgUC- -5'
5925 5' -60.4 NC_001806.1 + 22333 0.7 0.471348
Target:  5'- uUCCgGAUCUCGGGCGCCG-CGcGCAa -3'
miRNA:   3'- uAGG-CUAGGGUCCGCGGCuGCcUGUc -5'
5925 5' -60.4 NC_001806.1 + 33792 0.7 0.489745
Target:  5'- uGUUCGGUCUCGGuaGCCGGCcGGCGGg -3'
miRNA:   3'- -UAGGCUAGGGUCcgCGGCUGcCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 37784 0.7 0.50847
Target:  5'- cUCCGGggCCgGGGCGCgGggguccGCGGGCGGg -3'
miRNA:   3'- uAGGCUa-GGgUCCGCGgC------UGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 82141 0.69 0.517945
Target:  5'- --aUGGUgUCCAGGuCGCCGAgGGACAGc -3'
miRNA:   3'- uagGCUA-GGGUCC-GCGGCUgCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 29781 0.69 0.52462
Target:  5'- -cCCGcgCCCccccacgcagAGGCGCCGccgcgccccccgugACGGGCGGg -3'
miRNA:   3'- uaGGCuaGGG----------UCCGCGGC--------------UGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 2083 0.69 0.527491
Target:  5'- -gCCGGUCgCC-GGCGCUGGCGaGCAGc -3'
miRNA:   3'- uaGGCUAG-GGuCCGCGGCUGCcUGUC- -5'
5925 5' -60.4 NC_001806.1 + 61978 0.69 0.527491
Target:  5'- uUCCGuaaCCAGGuCGUCGGCGGccgACAGg -3'
miRNA:   3'- uAGGCuagGGUCC-GCGGCUGCC---UGUC- -5'
5925 5' -60.4 NC_001806.1 + 100739 0.69 0.5371
Target:  5'- -gCCGGgcgCCCAGGUGCgccCGGACAGc -3'
miRNA:   3'- uaGGCUa--GGGUCCGCGgcuGCCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.