miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5925 5' -60.4 NC_001806.1 + 1420 0.74 0.309381
Target:  5'- -gCCGAggCCCAgcgaaucccgggcGGCGCCGGCGG-CAGg -3'
miRNA:   3'- uaGGCUa-GGGU-------------CCGCGGCUGCCuGUC- -5'
5925 5' -60.4 NC_001806.1 + 2083 0.69 0.527491
Target:  5'- -gCCGGUCgCC-GGCGCUGGCGaGCAGc -3'
miRNA:   3'- uaGGCUAG-GGuCCGCGGCUGCcUGUC- -5'
5925 5' -60.4 NC_001806.1 + 2784 0.66 0.733605
Target:  5'- -gCCGcggcggCCCgGGGCGCCG-CGGGCuGg -3'
miRNA:   3'- uaGGCua----GGG-UCCGCGGCuGCCUGuC- -5'
5925 5' -60.4 NC_001806.1 + 3585 0.67 0.675243
Target:  5'- ---gGAUCCCcgcGGCGCCGuacccgGCGGGCAc -3'
miRNA:   3'- uaggCUAGGGu--CCGCGGC------UGCCUGUc -5'
5925 5' -60.4 NC_001806.1 + 4747 0.66 0.694918
Target:  5'- -gCCGGggCCCGGuCGCCGGCGGcguCGGc -3'
miRNA:   3'- uaGGCUa-GGGUCcGCGGCUGCCu--GUC- -5'
5925 5' -60.4 NC_001806.1 + 5464 0.7 0.458681
Target:  5'- cGUCCucgggcucauauaGUCCCAGGgGCCGGCGGGaAGg -3'
miRNA:   3'- -UAGGc------------UAGGGUCCgCGGCUGCCUgUC- -5'
5925 5' -60.4 NC_001806.1 + 5855 0.68 0.612688
Target:  5'- -cCCGGUCCCGcccgccGGaCGCCGggaccaacgggacgGCGGGCGGc -3'
miRNA:   3'- uaGGCUAGGGU------CC-GCGGC--------------UGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 6076 0.72 0.369222
Target:  5'- -cCCGGgggcgggCCCGGGCGgCGGgGGGCGGg -3'
miRNA:   3'- uaGGCUa------GGGUCCGCgGCUgCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 20084 0.67 0.685102
Target:  5'- -gCCGcUCCCGucguucguggccGGCGCCGucuGCGGGCGu -3'
miRNA:   3'- uaGGCuAGGGU------------CCGCGGC---UGCCUGUc -5'
5925 5' -60.4 NC_001806.1 + 20374 0.78 0.172047
Target:  5'- cGUCCcguuGGUCCC-GGCGuCCGGCGGGCGGg -3'
miRNA:   3'- -UAGG----CUAGGGuCCGC-GGCUGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 21137 0.67 0.685102
Target:  5'- -cCCGGcucCCCGGGCcccaCCGACGGGCc- -3'
miRNA:   3'- uaGGCUa--GGGUCCGc---GGCUGCCUGuc -5'
5925 5' -60.4 NC_001806.1 + 22333 0.7 0.471348
Target:  5'- uUCCgGAUCUCGGGCGCCG-CGcGCAa -3'
miRNA:   3'- uAGG-CUAGGGUCCGCGGCuGCcUGUc -5'
5925 5' -60.4 NC_001806.1 + 23532 0.67 0.685102
Target:  5'- -cCCGAcCCCcuGGGCgGCUGGCGGcgGCAGc -3'
miRNA:   3'- uaGGCUaGGG--UCCG-CGGCUGCC--UGUC- -5'
5925 5' -60.4 NC_001806.1 + 29781 0.69 0.52462
Target:  5'- -cCCGcgCCCccccacgcagAGGCGCCGccgcgccccccgugACGGGCGGg -3'
miRNA:   3'- uaGGCuaGGG----------UCCGCGGC--------------UGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 30379 0.66 0.74309
Target:  5'- aGUCUG-UgCCGGGCGCgugCGACGGugGc -3'
miRNA:   3'- -UAGGCuAgGGUCCGCG---GCUGCCugUc -5'
5925 5' -60.4 NC_001806.1 + 33792 0.7 0.489745
Target:  5'- uGUUCGGUCUCGGuaGCCGGCcGGCGGg -3'
miRNA:   3'- -UAGGCUAGGGUCcgCGGCUGcCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 37784 0.7 0.50847
Target:  5'- cUCCGGggCCgGGGCGCgGggguccGCGGGCGGg -3'
miRNA:   3'- uAGGCUa-GGgUCCGCGgC------UGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 38054 0.68 0.595827
Target:  5'- cUgCGAcgCCCAcGGCGuCCGccGCGGGCAGg -3'
miRNA:   3'- uAgGCUa-GGGU-CCGC-GGC--UGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 38376 0.72 0.361421
Target:  5'- uGUCCGAUUCCAGGuCGUCG-CGG-CGGc -3'
miRNA:   3'- -UAGGCUAGGGUCC-GCGGCuGCCuGUC- -5'
5925 5' -60.4 NC_001806.1 + 43505 0.66 0.721152
Target:  5'- -gCCGuggcggCCCAucaggacaagaugcGGCGCCuGGCGGACAc -3'
miRNA:   3'- uaGGCua----GGGU--------------CCGCGG-CUGCCUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.