miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5926 3' -53.8 NC_001806.1 + 66466 0.75 0.540386
Target:  5'- -cAGCCUGUCGGCGAac-UGGGGGUUc -3'
miRNA:   3'- cuUUGGACAGCCGCUauaGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 77249 0.75 0.570876
Target:  5'- gGggGCCUGUUGGCGGaauUCGacgcGGuGGCCg -3'
miRNA:   3'- -CuuUGGACAGCCGCUau-AGU----CC-CCGG- -5'
5926 3' -53.8 NC_001806.1 + 23929 0.75 0.570876
Target:  5'- aGGACCUGgccggCGGCGGggccuggGGGGGCCg -3'
miRNA:   3'- cUUUGGACa----GCCGCUauag---UCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 93879 0.75 0.581137
Target:  5'- --uGCCgGUCGGCGGgcccgCGGGaGGCCg -3'
miRNA:   3'- cuuUGGaCAGCCGCUaua--GUCC-CCGG- -5'
5926 3' -53.8 NC_001806.1 + 118041 0.74 0.622484
Target:  5'- uGAGGCCgcUGUUGGUGGUgGUCgAGGGGCg -3'
miRNA:   3'- -CUUUGG--ACAGCCGCUA-UAG-UCCCCGg -5'
5926 3' -53.8 NC_001806.1 + 67516 0.74 0.622484
Target:  5'- gGGAGcCCUGggccgucgCGGCGAgagAUCGGGGGgCg -3'
miRNA:   3'- -CUUU-GGACa-------GCCGCUa--UAGUCCCCgG- -5'
5926 3' -53.8 NC_001806.1 + 52613 0.73 0.663947
Target:  5'- uGGGACCUGUCGGgaaaaGAU-UCAGcGGGCg -3'
miRNA:   3'- -CUUUGGACAGCCg----CUAuAGUC-CCCGg -5'
5926 3' -53.8 NC_001806.1 + 24865 0.72 0.72516
Target:  5'- -cGugCUGgCGGCGg---CGGGGGCCg -3'
miRNA:   3'- cuUugGACaGCCGCuauaGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 113020 0.71 0.783405
Target:  5'- uGAACgUUGacgCGGCGG--UCGGGGGCCu -3'
miRNA:   3'- cUUUG-GACa--GCCGCUauAGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 49497 0.71 0.792679
Target:  5'- uGggGCggGUCGGCGGUucgCGGGuGGCg -3'
miRNA:   3'- -CuuUGgaCAGCCGCUAua-GUCC-CCGg -5'
5926 3' -53.8 NC_001806.1 + 93576 0.71 0.792679
Target:  5'- cGAcGCCguUCGGCGGcc-CGGGGGCCc -3'
miRNA:   3'- -CUuUGGacAGCCGCUauaGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 120316 0.7 0.810771
Target:  5'- --cACCUGgggggaCGGgGcgGUCGGGGGCg -3'
miRNA:   3'- cuuUGGACa-----GCCgCuaUAGUCCCCGg -5'
5926 3' -53.8 NC_001806.1 + 15809 0.7 0.811659
Target:  5'- uGGGCCUGUCGGaUGAUgcgggugaucugacuGUCGcacgggccccuuuuGGGGCCg -3'
miRNA:   3'- cUUUGGACAGCC-GCUA---------------UAGU--------------CCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 5099 0.7 0.819572
Target:  5'- -cGGCCcGUCGGUGGggccCGGGGaGCCg -3'
miRNA:   3'- cuUUGGaCAGCCGCUaua-GUCCC-CGG- -5'
5926 3' -53.8 NC_001806.1 + 81616 0.7 0.819572
Target:  5'- cGGGACCggagGUCGggaaGCGAUAUgGGGGuGUCg -3'
miRNA:   3'- -CUUUGGa---CAGC----CGCUAUAgUCCC-CGG- -5'
5926 3' -53.8 NC_001806.1 + 69605 0.7 0.83664
Target:  5'- cGAGGCg-GUCGGCc-UGUCGGGGGgCg -3'
miRNA:   3'- -CUUUGgaCAGCCGcuAUAGUCCCCgG- -5'
5926 3' -53.8 NC_001806.1 + 4937 0.7 0.844891
Target:  5'- --cGCCggcGUCGGUGcccgccgCGGGGGCCc -3'
miRNA:   3'- cuuUGGa--CAGCCGCuaua---GUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 96499 0.69 0.852944
Target:  5'- -cGACCcaggCGGCGAa--CGGGGGCCc -3'
miRNA:   3'- cuUUGGaca-GCCGCUauaGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 132688 0.69 0.852944
Target:  5'- gGggGCCUGgcccGCGGU---GGGGGCCa -3'
miRNA:   3'- -CuuUGGACagc-CGCUAuagUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 147803 0.69 0.860791
Target:  5'- cGGAGCCUGgcaugGGCGccgcgGGGGGCCu -3'
miRNA:   3'- -CUUUGGACag---CCGCuauagUCCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.