miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5926 3' -53.8 NC_001806.1 + 2512 0.67 0.941873
Target:  5'- -cGGCCUGggCGGCGGg---GGcGGGCCc -3'
miRNA:   3'- cuUUGGACa-GCCGCUauagUC-CCCGG- -5'
5926 3' -53.8 NC_001806.1 + 2775 0.69 0.860791
Target:  5'- cGGGCCUGcgccgCGGCGGcc-CGGGGcGCCg -3'
miRNA:   3'- cUUUGGACa----GCCGCUauaGUCCC-CGG- -5'
5926 3' -53.8 NC_001806.1 + 4937 0.7 0.844891
Target:  5'- --cGCCggcGUCGGUGcccgccgCGGGGGCCc -3'
miRNA:   3'- cuuUGGa--CAGCCGCuaua---GUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 5099 0.7 0.819572
Target:  5'- -cGGCCcGUCGGUGGggccCGGGGaGCCg -3'
miRNA:   3'- cuUUGGaCAGCCGCUaua-GUCCC-CGG- -5'
5926 3' -53.8 NC_001806.1 + 9379 0.67 0.946416
Target:  5'- gGAGGCCUGggaguaaCGGCGAUc----GGGCCu -3'
miRNA:   3'- -CUUUGGACa------GCCGCUAuagucCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 10487 0.67 0.937086
Target:  5'- -cGGCUgggGUCGGgGGUgggGUCGgaacuGGGGCCg -3'
miRNA:   3'- cuUUGGa--CAGCCgCUA---UAGU-----CCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 15809 0.7 0.811659
Target:  5'- uGGGCCUGUCGGaUGAUgcgggugaucugacuGUCGcacgggccccuuuuGGGGCCg -3'
miRNA:   3'- cUUUGGACAGCC-GCUA---------------UAGU--------------CCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 19254 0.68 0.89
Target:  5'- aAGACCaGUCGGaCG-UGUCGucGGGGUCg -3'
miRNA:   3'- cUUUGGaCAGCC-GCuAUAGU--CCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 22538 0.69 0.871419
Target:  5'- ---cCCUGUuggcgcgcgagaacgCGGCGcUGaCGGGGGCCg -3'
miRNA:   3'- cuuuGGACA---------------GCCGCuAUaGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 23929 0.75 0.570876
Target:  5'- aGGACCUGgccggCGGCGGggccuggGGGGGCCg -3'
miRNA:   3'- cUUUGGACa----GCCGCUauag---UCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 24774 0.67 0.935103
Target:  5'- uGGugCUGcgCGGCGAcgacgacggccCGGGGGCCc -3'
miRNA:   3'- cUUugGACa-GCCGCUaua--------GUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 24865 0.72 0.72516
Target:  5'- -cGugCUGgCGGCGg---CGGGGGCCg -3'
miRNA:   3'- cuUugGACaGCCGCuauaGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 27033 0.66 0.958618
Target:  5'- gGAGGCCga--GGCGGUcAUCGggccgugccuGGGGCCc -3'
miRNA:   3'- -CUUUGGacagCCGCUA-UAGU----------CCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 28154 0.68 0.91549
Target:  5'- -cGGCCUGagGGCcgcccccagcgcGAgGUgAGGGGCCg -3'
miRNA:   3'- cuUUGGACagCCG------------CUaUAgUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 29598 0.69 0.860791
Target:  5'- -cGACCUGgacgaCGGUGAgg-CGGGGGgCg -3'
miRNA:   3'- cuUUGGACa----GCCGCUauaGUCCCCgG- -5'
5926 3' -53.8 NC_001806.1 + 30831 0.68 0.923496
Target:  5'- gGAAACCUcccUCGGCccccgcgcugcuucuGGgccgCGGGGGCCg -3'
miRNA:   3'- -CUUUGGAc--AGCCG---------------CUaua-GUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 33123 0.69 0.883035
Target:  5'- cGggGCCcGgacCGcCGcgGUCGGGGGCCc -3'
miRNA:   3'- -CuuUGGaCa--GCcGCuaUAGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 33805 0.66 0.950719
Target:  5'- -uAGCCgGcCGGCGGguggacUCgcgGGGGGCCg -3'
miRNA:   3'- cuUUGGaCaGCCGCUau----AG---UCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 33980 0.66 0.962222
Target:  5'- cGGGCCggggGUCGcCGGgg-CAGGGGCg -3'
miRNA:   3'- cUUUGGa---CAGCcGCUauaGUCCCCGg -5'
5926 3' -53.8 NC_001806.1 + 36668 0.68 0.903225
Target:  5'- gGggGCCacGUgGGUuAUGUCcGGGGCCc -3'
miRNA:   3'- -CuuUGGa-CAgCCGcUAUAGuCCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.