miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5926 5' -55.9 NC_001806.1 + 151144 0.66 0.934696
Target:  5'- cCCGcGcGUCGCaGgcGcAggCGCGCCAGGUg -3'
miRNA:   3'- -GGC-C-CAGUG-CuaC-UuaGCGCGGUCCA- -5'
5926 5' -55.9 NC_001806.1 + 127571 0.66 0.934696
Target:  5'- aCGGuGUCAUaGAUgGGAUCGuCGUCGGGc -3'
miRNA:   3'- gGCC-CAGUG-CUA-CUUAGC-GCGGUCCa -5'
5926 5' -55.9 NC_001806.1 + 123127 0.66 0.934696
Target:  5'- aCCGGGUgGCGG---GUCGCGgCGGcGa -3'
miRNA:   3'- -GGCCCAgUGCUacuUAGCGCgGUC-Ca -5'
5926 5' -55.9 NC_001806.1 + 79696 0.66 0.929673
Target:  5'- gCCGGG-CACGcucccUGGcgCGCGCCacccAGGc -3'
miRNA:   3'- -GGCCCaGUGCu----ACUuaGCGCGG----UCCa -5'
5926 5' -55.9 NC_001806.1 + 20184 0.66 0.929158
Target:  5'- cCCGGGgccgGCGcgGAGUCgggcacgGCGCCAGu- -3'
miRNA:   3'- -GGCCCag--UGCuaCUUAG-------CGCGGUCca -5'
5926 5' -55.9 NC_001806.1 + 2569 0.66 0.924416
Target:  5'- gCGGGUCAaacAUGAGggcCGguCGCCAGGg -3'
miRNA:   3'- gGCCCAGUgc-UACUUa--GC--GCGGUCCa -5'
5926 5' -55.9 NC_001806.1 + 34415 0.66 0.924416
Target:  5'- gCCGGGcCGgGccGGGcCGgGCCGGGUg -3'
miRNA:   3'- -GGCCCaGUgCuaCUUaGCgCGGUCCA- -5'
5926 5' -55.9 NC_001806.1 + 42327 0.66 0.924416
Target:  5'- gCGGGggGCGugggGAAUCGCG-UAGGUg -3'
miRNA:   3'- gGCCCagUGCua--CUUAGCGCgGUCCA- -5'
5926 5' -55.9 NC_001806.1 + 146874 0.66 0.924416
Target:  5'- gCCGGGUCGCcAUGuuUCcCGUCuGGUc -3'
miRNA:   3'- -GGCCCAGUGcUACuuAGcGCGGuCCA- -5'
5926 5' -55.9 NC_001806.1 + 25683 0.66 0.9132
Target:  5'- -aGGa--GCGGUGuGUUGCGCCGGGg -3'
miRNA:   3'- ggCCcagUGCUACuUAGCGCGGUCCa -5'
5926 5' -55.9 NC_001806.1 + 22635 0.67 0.901056
Target:  5'- aCCGGGcgagCGCGcgGug-CcCGCCGGGUa -3'
miRNA:   3'- -GGCCCa---GUGCuaCuuaGcGCGGUCCA- -5'
5926 5' -55.9 NC_001806.1 + 50645 0.67 0.901056
Target:  5'- cCCGGGcgUGCGggGAcgCgcaccgGCGCCGGGa -3'
miRNA:   3'- -GGCCCa-GUGCuaCUuaG------CGCGGUCCa -5'
5926 5' -55.9 NC_001806.1 + 64874 0.67 0.893987
Target:  5'- cCCGGGcCACGGcgGGAUCggccgcaagaccaGCGCCGGc- -3'
miRNA:   3'- -GGCCCaGUGCUa-CUUAG-------------CGCGGUCca -5'
5926 5' -55.9 NC_001806.1 + 20103 0.67 0.888002
Target:  5'- gCCGGcgccGUCuGCGGgcgucGGUCGCGCCGGGc -3'
miRNA:   3'- -GGCC----CAG-UGCUac---UUAGCGCGGUCCa -5'
5926 5' -55.9 NC_001806.1 + 135062 0.67 0.881141
Target:  5'- aCCGGcccCGCGggGA--CGCGCCGGGc -3'
miRNA:   3'- -GGCCca-GUGCuaCUuaGCGCGGUCCa -5'
5926 5' -55.9 NC_001806.1 + 151075 0.67 0.881141
Target:  5'- -gGGGUCGCGG-GggUCGCGg-GGGUc -3'
miRNA:   3'- ggCCCAGUGCUaCuuAGCGCggUCCA- -5'
5926 5' -55.9 NC_001806.1 + 99935 0.67 0.874064
Target:  5'- cCCGGGagaAUGgcGGGccgCGCGCCGGGa -3'
miRNA:   3'- -GGCCCag-UGCuaCUUa--GCGCGGUCCa -5'
5926 5' -55.9 NC_001806.1 + 95301 0.67 0.866774
Target:  5'- gCGGGgggCGCGgcGGA-CGCGCCcaAGGg -3'
miRNA:   3'- gGCCCa--GUGCuaCUUaGCGCGG--UCCa -5'
5926 5' -55.9 NC_001806.1 + 32960 0.68 0.859278
Target:  5'- cCCGGGcCGgGGccccuUGggUC-CGCCGGGg -3'
miRNA:   3'- -GGCCCaGUgCU-----ACuuAGcGCGGUCCa -5'
5926 5' -55.9 NC_001806.1 + 79671 0.68 0.859278
Target:  5'- uCCGGGUCGCGcg----CGCGCCGa-- -3'
miRNA:   3'- -GGCCCAGUGCuacuuaGCGCGGUcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.